LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium164g00044	ATGAAGCAACAATCATGGAGATCAACTGAGAGATCAGTTTTACCTTCTTTTACAGGTTCCAGTATGGGTAAGTCACCTGGAAAATGGATCAAAACCGTACTGTTTGGGAAAAAGTCATCCAAATCCAATATTTCAAAAGGCAGAGAGCTTGTTAATAAAAAAGAAGGAGTAATAGTTACCTCCAAGGTGCCGGAAACGGGTTTGACTTTAGAACCAACCTCTGATGCTATTCCCAATCGCGATGAAGTCCAGGAAGTGGATAACAAAGAAGCGGAAAATGTTTTACCTGACAATCAAGAAATAGACTTAGTAGGATCTACTAATGAAGAGGATGCACTGGATCCCGAGAAAATGAGGCTGGAGGAAGCAGCAACAAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGAAGAGCATTTAGGGCCTTGAAAGGCATAATAAGGCTGCAAGCACTCATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACATTATGCACTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAAGAGTTAGGCAGTCTAATGTTGGTTCTGAAATCCATGAGAAGTACAATATATTGAACCCTCTGGATGGGAAATTTGTCAAGCCAATTGCTATATCCACGAAAATTACAAAGCTGTCAGCAAATGCATTCATTCTTAAGCTTTTTACTTCGTCAACTACAATAATGGCATTGCGTTTGCAATATGTTCCGGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCAATTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCAGGATAGCAAGGCTCAAAGAAAGCATGGCAATATTTCAGTTGGAGATACTCAAACGAGTAAGTCAAAACGTACCAACAGGAAGCTTCCTACTTCGAATTTTGACTCAGTCCCAGTGCTAGCAAATCCTGAATTTGAGAAACCCAAAAGAAACTCAAGGAAAATTCCAAGTCAACCCTCAGATCCCGTGCAGGAAAATCCACAAAATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAATCCTGTTGCTGAGAATGCTGTTCCTGCAGAAGTTGAAACTGAGATGCCAAAGGAACATTTGGAAAAGGCCACAGTTACCTCATCCCTTGCTGTTTCAGAACAAGAGGTCGTTAGTTTTAATGACAAGGTCAAGAAGGAAGCAGCCTTAACTGTTTCCAGCGTGCAAGATATAGAAACTACTCCAAGACTTTCAGCTAGTAACGAAATGCTTGACACACCAACTAGTAATCAAGTGACTGTGGAATCGAAGCCCTTGACTGAAATTACAACTAAAGATAAAAATATTTCCGATGAAGTAAAATATGAGCCCATAGATTTGCCAGAGCTTATTTGTGGAGATGAAAATTCTCTCTTGACAAATGGAGATTTGAGTCACAAGGAAGATCCAATAGGCAGTGAAAACCAGAAACCGAACAGAAAAGGCTCTAATGTAGCAAAACAGGAACGTGCAGATAATGGAATACAGAATAGTCCAACATTGCCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTAAGGGCACAAGGATCTCCAAGATTTGGACAAGATGGAAGTGAAAGAAACAACCAGACCCGGCGCCATTCTTTGCCATCCTCAACTAACAGCAAAATTAGTTCGCATTCACCCAGGACACACAGACCAGTTCACTCAGGTGGCAAAGGGGGCAACAGAAGCGACAGAACTGTATCATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAATGGAGGAGGTAA	1818	0.4153	MKQQSWRSTERSVLPSFTGSSMGKSPGKWIKTVLFGKKSSKSNISKGRELVNKKEGVIVTSKVPETGLTLEPTSDAIPNRDEVQEVDNKEAENVLPDNQEIDLVGSTNEEDALDPEKMRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCTMYGIVKFQALVRGGRVRQSNVGSEIHEKYNILNPLDGKFVKPIAISTKITKLSANAFILKLFTSSTTIMALRLQYVPGDPNSVLSWLERWSASQFWKPVPQPKKIQDSKAQRKHGNISVGDTQTSKSKRTNRKLPTSNFDSVPVLANPEFEKPKRNSRKIPSQPSDPVQENPQNELEKVKRNLRKVHNPVAENAVPAEVETEMPKEHLEKATVTSSLAVSEQEVVSFNDKVKKEAALTVSSVQDIETTPRLSASNEMLDTPTSNQVTVESKPLTEITTKDKNISDEVKYEPIDLPELICGDENSLLTNGDLSHKEDPIGSENQKPNRKGSNVAKQERADNGIQNSPTLPSYMAATESAKAKLRAQGSPRFGQDGSERNNQTRRHSLPSSTNSKISSHSPRTHRPVHSGGKGGNRSDRTVSSSSRDGNGKVIQAEWRR	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium164g00044	605	ProSiteProfiles	IQ motif profile.	144	171	IPR000048	GO:0005515
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	416	605	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	442	460	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	504	520	-	-
	Vium164g00044	605	Gene3D	-	117	167	-	-
	Vium164g00044	605	ProSiteProfiles	IQ motif profile.	120	148	IPR000048	GO:0005515
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	581	596	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	269	342	-	-
	Vium164g00044	605	Pfam	Protein of unknown function (DUF4005)	503	583	IPR025064	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	539	566	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	280	311	-	-
	Vium164g00044	605	Pfam	IQ calmodulin-binding motif	122	141	IPR000048	GO:0005515
	Vium164g00044	605	Pfam	IQ calmodulin-binding motif	144	161	IPR000048	GO:0005515
	Vium164g00044	605	PANTHER	IQ-DOMAIN 5-RELATED	22	560	-	-
	Vium164g00044	605	SMART	iq_5	119	141	IPR000048	GO:0005515
	Vium164g00044	605	SMART	iq_5	142	163	IPR000048	GO:0005515
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vium164g00044	605	MobiDBLite	consensus disorder prediction	416	441	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium164g00044	Vium-Chr164	401513	409838	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium164g00044	22	605	IQD Protein Family	AT1G74690	43.393	1.68e-121	370

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium164g00044	-		-	gmx:100794636	953.74