Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00043 ATGGCAAATTCTACTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGGTGCTATGCGTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCCAAATCTCTCAGTGCCCTAACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTTTTTCAAGCCGCCATGTGCCCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCAGAAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAATCTTCCCATTTATTATTTACAAACAAACTGCACTGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCCGACAGGAGAAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATCGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCATCAAGACACAGAATATACTGCCAATGCATTGTTGCGGGTTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCCCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGTAAGAATATAACTATTGAATTTATTTCTCTTCGGATTTACCCATTTTCTTTAATGCTTTTGACTTTATTCTCAGGATTAAAAATCTTCACAGCCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTGCAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCAAATTCTTTGTTCAAAATATATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCGTTCAAGGGAATACCAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGCGGTCTTAATTATTATGTTTGCTGAGTGGATTGTGATGCTTTTTGCTGCCTTCTACATTGATCAAGTTTTGACGTTAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAAGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCCACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTAGAGGCTCAGTCCTAAAACAAGCAGTAGAGGACTCTTTGAAGGATTTAAACCTTTTTCACGGAGGGGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAA 2481 0.4091 MANSTSASFFTQAKALLLKNITFQKRNVKTNVRLILFPAVLCVLLFVLQLLFDTQLDKSKFKCGCVCADNRTQISQCPNSEKRCGVQYSDFFQAAMCPIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLGSESKPERNNFIEPAFSSNLPIYYLQTNCTGTENSGFSFPSPTGENNEIKCALAKNLWRNSSTDINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYHQDTEYTANALLRVPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGPLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVTSVIYMLCFVIFGSLLGKNITIEFISLRIYPFSLMLLTLFSGLKIFTANDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFKFFVQNISFPRGWIILMELYPGFALYRGLYELAQFSVQGNTRGTDGMKWHNLSESTNGMKAVLIIMFAEWIVMLFAAFYIDQVLTLGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDNLTGREHLLFYGRLKNLRGSVLKQAVEDSLKDLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKHIPWKRQRPYVIDWAFL 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00043 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 810 IPR027417 -
Vium164g00043 826 Gene3D - 643 812 IPR027417 -
Vium164g00043 826 Pfam ABC transporter 676 809 IPR003439 GO:0005524
Vium164g00043 826 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 17 602 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium164g00043 826 Pfam ABC-2 family transporter protein 262 584 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00043 Vium-Chr164 371846 392075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00043 660 808 Calmodulin-binding Proteins AT2G36910 24.528 1.71e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00043 - - vra:106769009 1513.82