Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00042 ATGGCAAATTCTACTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGGTGCTATGCGTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCCAAATCTCTCAGTGCCCTAACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTTTTTCAAGCCGCCATGTGCCCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCAGAAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAATCTTCCCATTTATTATTTACAAACAAACTGCACTGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCCGACAGGAGAAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATCGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCATCAAGACACAGAATATACTGCCAATGCATTGTTGCGGGTTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCCCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGATTAAAAATCTTCACAGCCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTGCAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCAAATTCTTTGTTCAAAATATATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCGTTCAAGGGAATACCAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGCGGTCTTAATTATTATGTTTGCTGAGTGGATTGTGATGCTTTTTGCTGCCTTCTACATTGATCAAGTTTTGACGTTAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAAGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCCACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTAGAGGCTCAGTCCTAAAACAAGCAGTAGAGGACTCTTTGAAGGATTTAAACCTTTTTCACGGAGGGGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAATTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGATTATGGAGTGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAAATGGCAGTTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATATCATCTCTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACGTTGGAAGATGTATTCATCAAGGTAGCACGTGAGGCTCAAGCTTTTGATACCTTGTCATAA 2847 0.4138 MANSTSASFFTQAKALLLKNITFQKRNVKTNVRLILFPAVLCVLLFVLQLLFDTQLDKSKFKCGCVCADNRTQISQCPNSEKRCGVQYSDFFQAAMCPIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLGSESKPERNNFIEPAFSSNLPIYYLQTNCTGTENSGFSFPSPTGENNEIKCALAKNLWRNSSTDINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYHQDTEYTANALLRVPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGPLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVTSVIYMLCFVIFGSLLGLKIFTANDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFKFFVQNISFPRGWIILMELYPGFALYRGLYELAQFSVQGNTRGTDGMKWHNLSESTNGMKAVLIIMFAEWIVMLFAAFYIDQVLTLGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDNLTGREHLLFYGRLKNLRGSVLKQAVEDSLKDLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKIVYMDEPSSGLDPASRKRLWSVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFTVSAWGLVDTTLEDVFIKVAREAQAFDTLS 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00042 948 Gene3D - 618 893 IPR027417 -
Vium164g00042 948 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 863 IPR003439 GO:0005524
Vium164g00042 948 FunFam ABC transporter A family member 7 615 891 - -
Vium164g00042 948 SMART AAA_5 656 840 IPR003593 GO:0016887
Vium164g00042 948 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Vium164g00042 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 854 IPR027417 -
Vium164g00042 948 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 600 942 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium164g00042 948 Pfam ABC-2 family transporter protein 262 559 IPR013525 GO:0016020|GO:0140359
Vium164g00042 948 CDD ABC_subfamily_A 630 851 - -
Vium164g00042 948 Pfam ABC transporter 651 792 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00042 Vium-Chr164 371204 392070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00042 635 874 Calmodulin-binding Proteins AT2G36910 24.506 7.53e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00042 - - vra:106769009 1767.67