Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00041 ATGGCAAATTCTACTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGGTGCTATGCGTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCCAAATCTCTCAGTGCCCTAACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTTTTTCAAGCCGCCATGTGCCCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCAGAAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAATCTTCCCATTTATTATTTACAAACAAACTGCACTGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCCGACAGGAGAAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATCGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCATCAAGACACAGAATATACTGCCAATGCATTGTTGCGGGTTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCCCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGATTAAAAATCTTCACAGCCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTGCAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCAAATTCTTTGTTCAAAATATATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCGTTCAAGGGAATACCAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGCGGTCTTAATTATTATGTTTGCTGAGTGGATTGTGATGCTTTTTGCTGCCTTCTACATTGATCAAGTTTTGACGTTAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAAGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCCACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTAGAGGCTCAGTCCTAAAACAAGCAGTAGAGGACTCTTTGAAGGATTTAAACCTTTTTCACGGAGGGGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAATTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGATTATGGAGTGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAAATGGCAGTTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATATCATCTCTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACGTTGGAAGATGTATTCATCAAGGTAGCACGTGAGGCTCAAGCTTTTGATACCTTGTCATAA 2784 0.4156 MANSTSASFFTQAKALLLKNITFQKRNVKTNVRLILFPAVLCVLLFVLQLLFDTQLDKSKFKCGCVCADNRTQISQCPNSEKRCGVQYSDFFQAAMCPIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLGSESKPERNNFIEPAFSSNLPIYYLQTNCTGTENSGFSFPSPTGENNEIKCALAKNLWRNSSTDINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYHQDTEYTANALLRVPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGPLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGLKIFTANDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFKFFVQNISFPRGWIILMELYPGFALYRGLYELAQFSVQGNTRGTDGMKWHNLSESTNGMKAVLIIMFAEWIVMLFAAFYIDQVLTLGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDNLTGREHLLFYGRLKNLRGSVLKQAVEDSLKDLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKIVYMDEPSSGLDPASRKRLWSVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFTVSAWGLVDTTLEDVFIKVAREAQAFDTLS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00041 927 CDD ABC_subfamily_A 609 830 - -
Vium164g00041 927 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 579 921 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium164g00041 927 Pfam ABC transporter 630 771 IPR003439 GO:0005524
Vium164g00041 927 ProSitePatterns ABC transporters family signature. 744 758 IPR017871 GO:0005524|GO:0016887
Vium164g00041 927 Gene3D - 597 872 IPR027417 -
Vium164g00041 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 833 IPR027417 -
Vium164g00041 927 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 605 842 IPR003439 GO:0005524
Vium164g00041 927 FunFam ABC transporter A family member 7 594 870 - -
Vium164g00041 927 SMART AAA_5 635 819 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00041 Vium-Chr164 371204 392070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00041 614 853 Calmodulin-binding Proteins AT2G36910 24.506 7.53e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00041 - - vra:106769009 1718.36