Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00040 ATGGCAAATTCTACTTCTGCTAGCTTCTTCACTCAAGCAAAAGCGCTTCTTCTCAAGAACATTACCTTCCAGAAACGGAATGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGCGGTGCTATGCGTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTGGATAAAAGCAAATTCAAATGCGGCTGCGTGTGTGCCGACAACAGAACCCAAATCTCTCAGTGCCCTAACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCGATTTTTTTCAAGCCGCCATGTGCCCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCTGCTCCACCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTTTGCTCTTCACCGGAGAGAATCACTCCTTTGCGCTGAGCGTATCTGAGAAGATGTTTCGGAGTACCCTGAGTATAAGTGATTTTGGTAGTAATTTCCTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCAGAAAGGAACAATTTTATTGAACCTGCTTTCTCTTCGAATCTTCCCATTTATTATTTACAAACAAACTGCACTGGAACAGAGAACTCTGGATTCTCCTTTCCCTCGCCGACAGGAGAAAACAATGAGATTAAATGTGCTCTGGCTAAAAATTTATGGCGTAATAGTTCTACTGATATCAACAGTGAGCTGTACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAATCAATGAGATCGTTTCAGCTTTTGATTTTCTAAATTCAAATGGTAATAGATATAATGTCGGTATATGGTACAACTCAACCTACCATCAAGACACAGAATATACTGCCAATGCATTGTTGCGGGTTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTGCTTGGACCCGGAACCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCATTTTTAGGCTTGACATATCTTCTATCGTGGGCCCTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATAGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATTTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGTAAGAATATAACTATTGAATTTATTTCTCTTCGGATTTACCCATTTTCTTTAATGCTTTTGACTTTATTCTCAGGATTAAAAATCTTCACAGCCAATGACTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTGCAAATTGCGCTAGCATTTTTGGTGGCTACCATGTTTTCAAATGTCAAGACTGCAACAGTAACTGCATATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCAAATTCTTTGTTCAAAATATATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCGTTCAAGGGAATACCAGGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGCGGTCTTAATTATTATGTTTGCTGAGTGGATTGTGATGCTTTTTGCTGCCTTCTACATTGATCAAGTTTTGACGTTAGGAAGTAGAAAAGGTCCTCTTTTCTTATTGAAAGGATTTCAGAAAAAGTCTCCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGAATTATCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAAGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTATGTGACGATCTAAGAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCCTGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAACCCACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGGTGGAATATATACTACCATGGGTGTATGTCCACAACATGACTTGCTGTGGGACAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTAGAGGCTCAGTCCTAAAACAAGCAGTAGAGGACTCTTTGAAGGATTTAAACCTTTTTCACGGAGGGGTTGCCGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAATTGTTTACATGGATGAACCAAGTTCCGGATTAGACCCTGCCTCAAGAAAAAGATTATGGAGTGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATTTTTGTAAATGGCAGTTTGCAGTGTGTAGGAAATGCAAAAGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTGACAGTGACAACATCTTCAGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATATCATCTCTCGGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGTTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACGTTGGAAGATGTATTCATCAAGGTAGCACGTGAGGCTCAAGCTTTTGATACCTTGTCATAA 2922 0.41 MANSTSASFFTQAKALLLKNITFQKRNVKTNVRLILFPAVLCVLLFVLQLLFDTQLDKSKFKCGCVCADNRTQISQCPNSEKRCGVQYSDFFQAAMCPIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDASCRRTDSCPLSLLFTGENHSFALSVSEKMFRSTLSISDFGSNFLAGLAVNVLGSESKPERNNFIEPAFSSNLPIYYLQTNCTGTENSGFSFPSPTGENNEIKCALAKNLWRNSSTDINSELYKGYQRGNSEGQINEIVSAFDFLNSNGNRYNVGIWYNSTYHQDTEYTANALLRVPRSVNLISNSYLQFLLGPGTKIIFEFVKEMPKPETIFRLDISSIVGPLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYGYFLVTSVIYMLCFVIFGSLLGKNITIEFISLRIYPFSLMLLTLFSGLKIFTANDYSIQFVFYFIYINLQIALAFLVATMFSNVKTATVTAYIGVFGTGLLGGFLFKFFVQNISFPRGWIILMELYPGFALYRGLYELAQFSVQGNTRGTDGMKWHNLSESTNGMKAVLIIMFAEWIVMLFAAFYIDQVLTLGSRKGPLFLLKGFQKKSPFQKLDTQMQVSKELSQMEKPDVIQEKEKVEELLLEPTINHAILCDDLRKVYPGRDGNPDKFAVRGLFLSVPPGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMGGIYTTMGVCPQHDLLWDNLTGREHLLFYGRLKNLRGSVLKQAVEDSLKDLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKIVYMDEPSSGLDPASRKRLWSVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVLTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDVAKRKFTVSAWGLVDTTLEDVFIKVAREAQAFDTLS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00040 973 ProSitePatterns ABC transporters family signature. 790 804 IPR017871 GO:0005524|GO:0016887
Vium164g00040 973 Pfam ABC transporter 676 817 IPR003439 GO:0005524
Vium164g00040 973 Gene3D - 643 918 IPR027417 -
Vium164g00040 973 CDD ABC_subfamily_A 655 876 - -
Vium164g00040 973 SMART AAA_5 681 865 IPR003593 GO:0016887
Vium164g00040 973 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 888 IPR003439 GO:0005524
Vium164g00040 973 FunFam ABC transporter A family member 7 640 916 - -
Vium164g00040 973 Pfam ABC-2 family transporter protein 262 584 IPR013525 GO:0016020|GO:0140359
Vium164g00040 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 879 IPR027417 -
Vium164g00040 973 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 625 967 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00040 Vium-Chr164 371204 392071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00040 660 899 Calmodulin-binding Proteins AT2G36910 24.506 7.83e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00040 - - vra:106769009 1826.6