Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00038 ATGGGAAATTTCTGTGCTCGGTGCAAGATTGATGGCAATTTGAATCCACACCCATGTTCTGAAGTTCCCAATAGAAGCACCCAGTTGTTTGTTCATTCAAATCCAAACGGGTATGGATACATTGATGGAGGGAAACCTGAGATTCTCCCTACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAACCCTTCACATTATATGATCTTAAGAAGGCCACAGGAAATTTTCAGCCTTATAATCTTATTGGAGAAGGAGGATTCGGAAATGTTTATAAGGGGAGAATTAACGAAACTAAATCCCACGGGGGTACAATTTCTGGATCTGGAAGAGATGTAGCCGTTAAGAAGCTTAAGCCTGAAGGCTTTCAAGGGCACAAGGAGTGGCTGTCTGAAGTGAATCATCTTGGCCAACTTCACCACCAGAATCTCGTCAAACTTATTGGATACTGCCTGGAAGGAGATAACCGACTTCTAGTGTACGAGTACATGCCCAACGGATGCTTGGAAGATCATATATTTCGCAAGGGCACACAACCACTTCCCTGGGCTACAAGAATCAAGATTGCCACAGGTGCTGCTCGAGGTCTTTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAACATTTTGATAGATTCGGAATTTAATGCAAAACTGTCGGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTATGTTTCCACCCAAGTTCTGGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACATCAAGGTGTGATGTGTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACGTAATCTGGTAGAATGGGCAAGACCCTATTTGGGTGAAAGGAGGAAGTTGTTCCGGATTATGGATACCAGGTTAGAAGGGCAATACCCGCAGAAGGCAGCTTATACAGTTGCAATAATTGCGTTACAGTGTATTTCTGATGCCAAGACTAGGCCACAAATGTCTGAGGTTTTGTCTGCCTTGGAACACTTACCAGCCACTAGACGTTCAGCTAGGTCTCCCCAGGCTTCACAATCTGTGTTGGAAAGTAAGGGTGATTCACAGAATCTGGGAAACCCTGTGTCTCCAAGGCAATGCCAGCAAACTTGTGGTATATGGCCCCATCCTTGCCTTTGGTACCCTTTAACTGGCCACTAG 1251 0.4492 MGNFCARCKIDGNLNPHPCSEVPNRSTQLFVHSNPNGYGYIDGGKPEILPTPRSEGDILSSPHLKPFTLYDLKKATGNFQPYNLIGEGGFGNVYKGRINETKSHGGTISGSGRDVAVKKLKPEGFQGHKEWLSEVNHLGQLHHQNLVKLIGYCLEGDNRLLVYEYMPNGCLEDHIFRKGTQPLPWATRIKIATGAARGLSFLHDSKQQIIYRDFKASNILIDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTSRCDVYSFGVVLLELLSGRHAIDNTKSGVERNLVEWARPYLGERRKLFRIMDTRLEGQYPQKAAYTVAIIALQCISDAKTRPQMSEVLSALEHLPATRRSARSPQASQSVLESKGDSQNLGNPVSPRQCQQTCGIWPHPCLWYPLTGH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00038 416 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium164g00038 416 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Vium164g00038 416 FunFam Serine/threonine-protein kinase PBS1 166 377 - -
Vium164g00038 416 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Vium164g00038 416 Gene3D Phosphorylase Kinase; domain 1 51 165 - -
Vium164g00038 416 PANTHER OS01G0588500 PROTEIN-RELATED 57 362 - -
Vium164g00038 416 FunFam Serine/threonine-protein kinase BIK1 49 165 - -
Vium164g00038 416 MobiDBLite consensus disorder prediction 368 392 - -
Vium164g00038 416 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Vium164g00038 416 Gene3D Transferase(Phosphotransferase) domain 1 166 385 - -
Vium164g00038 416 CDD STKc_IRAK 85 362 - -
Vium164g00038 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vium164g00038 416 MobiDBLite consensus disorder prediction 366 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00038 Vium-Chr164 358643 364728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00038 67 362 Glycoside Hydrolase AT3G07070 53.000 3.34e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium164g00038 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00038 - - gmx:100791844 615.535