Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00035 ATGGCCAAGTCCATTCATCACGCTAGAGTCCTCATCAGGCAGAGGCACATAAGGGTTGGGAGACAGGTGGTGAACATTCCATCATTCATGGTTAGGGTTGATTCTCAGAAGCACATTGACTTCTCACTCACGAGTCCACTTGGTGGTGGTCGCCCTGGACGCGTGAAGAGAAGGAACCAAAAGGCTGCTGCTAAAAAGGCCGCTGGTGGAGATGGAGATGAGGAGGATGAAGATTAG 237 0.5105 MAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQKAAAKKAAGGDGDEEDED 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00035 78 CDD S4 1 34 - -
Vium164g00035 78 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 66 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vium164g00035 78 MobiDBLite consensus disorder prediction 41 78 - -
Vium164g00035 78 SUPERFAMILY Alpha-L RNA-binding motif 1 45 - -
Vium164g00035 78 Pfam S4 domain 1 33 IPR002942 GO:0003723
Vium164g00035 78 Gene3D - 1 67 IPR036986 GO:0003723
Vium164g00035 78 ProSiteProfiles S4 RNA-binding domain profile. 2 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00035 Vium-Chr164 328321 329069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00035 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 88.235 1.70e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00035 K02997 - psom:113299161 122.864