Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00031 ATGGGATCAGAGGGTGTGGCTCCTGCAGTTGTTGGGACATCAAAAAGCAGGTCTTCTTCTGGTAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCCGAAAGGGAGAAAATGAAACGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGCACTTGATGTGAATGAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCGGCTAGGTTGCTAAAAGACTTGCTCTCTCAGATCGAGTCCCTCAAGAAAGAGAATGTCACACTGTTGTCTGAATCGCATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGAGAGATACAGGCAAGAGTTGCTCAATCTAAACCTGACCTGAATGTACCTCCCCATTTGGAACTTGACCCACTGGAGCAGTCAAATTTTCCAGGACAGAGTCTCCAATTGCATACTATGGAACCTAACTTGCAGCAAGGATCTGCAGTTTTGCTTGTCCCTTTTCCCGATCTTCAAGCTTCGTTTCCAGCTGCTAATGTTAACGAAGTAGCTCCAAATTCCTCTTCTGTTGTCAGTAAACCGCATGCAAGGTATCCCACAGCAGCAGATTCATGGCCATCACAGCTGCTTGGATAG 660 0.4424 MGSEGVAPAVVGTSKSRSSSGKMNQGKVPRKIHKAEREKMKREHLNELFLDLANALDVNENNGKASILCEAARLLKDLLSQIESLKKENVTLLSESHYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNVPPHLELDPLEQSNFPGQSLQLHTMEPNLQQGSAVLLVPFPDLQASFPAANVNEVAPNSSSVVSKPHARYPTAADSWPSQLLG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00031 219 Coils Coil 75 95 - -
Vium164g00031 219 Coils Coil 103 123 - -
Vium164g00031 219 MobiDBLite consensus disorder prediction 1 32 - -
Vium164g00031 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 105 IPR036638 GO:0046983
Vium164g00031 219 Gene3D - 21 95 IPR036638 GO:0046983
Vium164g00031 219 MobiDBLite consensus disorder prediction 192 219 - -
Vium164g00031 219 PANTHER TRANSCRIPTION FACTOR BHLH47 14 218 - -
Vium164g00031 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 78 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00031 Vium-Chr164 305956 308483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00031 7 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 48.472 3.56e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00031 - - gmx:100782436 367.466