Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00030 ATGGAAGGAGGCGACGATCTCCACCATCATCACTACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAAGCGGCCTCGTGCTCCACCTCCTCCCCCTACCCTTCCCTAGCAATCTCCGCGGAACCCACCACGTCCAACTCCACCCGATCCAACCAGCTCGCGGCGGCGTCGGACCCTCCAAACAGACAAAAGCCCCCACCCAAACGCACGTCGACCAAGGACCGGCACACGAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCTCTCTGCGCCGCTCGCGTCTTCCAACTCACGCGCGAACTCGGTCACAAGTCCGATGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCTGCCGTCATCGCCGCCACCGGGACCGGAACCATCCCCGCTAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCTGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCTTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACACCAACCCAACCAACACCTCCACACTTCTCAATTTCCAATCCAACAACCTGAACACCTCCATGCTCCAGGCGAAGCCCGAAGCTCCCTCCACCTTAGATTTGTCCGACACAAGCGCGGAGGAATCAACCCTAGGCCGGAAAAGAAGACCGACGGAACAAGACCTATCCTCCTCCTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAGTGCAGGCACGATTCCTGCGAGCCACGCCGCCAACATATGGATGGTGGCCAATTCAAACACTAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGTGCCTTGTATCGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTCCCCACGCCCATGGCACTTTTGCCGAGTCAGCAACTGGGGTCTTCTGGGATTGGTGCTGTTGGGGGAAGCAGTAATAATAATAGTAATAACAACGGCAATAATAATATGAACGAAGGGCATTTGAGTATGCTTGCGGGGCTCAGTCCTTATCGTCCTGTTATCGGCGTTTCTGAATCTCAGGCGAGCGGCTCGCAATCGCATCGTGGAGGTGCGGCAGATGATCGCCATGATACCACCAGTCACCACTCCTAG 1197 0.5714 MEGGDDLHHHHYHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPTTSNSTRSNQLAAASDPPNRQKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNPTNTSTLLNFQSNNLNTSMLQAKPEAPSTLDLSDTSAEESTLGRKRRPTEQDLSSSSQHQMGSYLLQSSAGTIPASHAANIWMVANSNTNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNSNNNGNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGAADDRHDTTSHHS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00030 398 MobiDBLite consensus disorder prediction 373 398 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 75 90 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 230 244 - -
Vium164g00030 398 Pfam TCP family transcription factor 78 245 IPR017887 -
Vium164g00030 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 34 350 IPR005333 GO:0003700
Vium164g00030 398 MobiDBLite consensus disorder prediction 384 398 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 18 32 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 33 66 - -
Vium164g00030 398 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Vium164g00030 398 MobiDBLite consensus disorder prediction 214 229 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 18 90 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 214 252 - -
Vium164g00030 398 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00030 Vium-Chr164 277790 280519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00030 71 392 TCP Transcription Factor Family AT3G47620 44.258 6.40e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium164g00030 TCP 2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00030 - - gmx:100790785 607.831