Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00025 ATGAACATGGGGAGGCCACCTTGTTGTGACAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAGGAAGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACTAACACAGGTTTGACGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGCAATTTCACCGAGCATGAGGAGAAGATCATAATCCACCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCCATAGCTTCGTATCTTCCAGAAAGGACAGACAATGACATAAAAAATTATTGGAATACCAATTTGAAGAAGAAGATGAAAGCAAGTGATCAAAACGAAGAGCAAGAGGGACATTCTTCTTCTTCTTCTTCACATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGATATACAAACAGCCAAACAAGCCCTGTGTGATGCTTTGTCCCTTCACACGACACCAGCAACACATGCTGTGCCTGAGACCACCAAGCCTTCTTCAACTTCTCATCAACCCTACAGCCACGCCTCATCTTCATACGCATCTAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAACTCACTAGGGGATTATTCCTTCAATAACATGGTCAATATTAATACACCAAGATCCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATCATGTTTTTGACTTGTTCACCTTCAACTCCTCCACAAACTATGGTTCTGCCTCTCAGACTCAAGTGCCTCTTACCATGATAGAGAATTGGCTTTTCGAGGATTGGGCTTCTCAGTCTCATGAAGATCTGATGAGCATGTCGCTGGAAGAAAGTACTTCAGGTTTGTGTTAG 912 0.4342 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLTRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTNLKKKMKASDQNEEQEGHSSSSSSHPKGQWERRLQTDIQTAKQALCDALSLHTTPATHAVPETTKPSSTSHQPYSHASSSYASSYENISRLMENWMKTPNSLGDYSFNNMVNINTPRSSSSEGAHSTTNTTCAQDHVFDLFTFNSSTNYGSASQTQVPLTMIENWLFEDWASQSHEDLMSMSLEESTSGLC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00025 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Vium164g00025 303 MobiDBLite consensus disorder prediction 127 144 - -
Vium164g00025 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 237 - -
Vium164g00025 303 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vium164g00025 303 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vium164g00025 303 SMART sant 68 116 IPR001005 -
Vium164g00025 303 SMART sant 15 65 IPR001005 -
Vium164g00025 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Vium164g00025 303 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vium164g00025 303 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vium164g00025 303 MobiDBLite consensus disorder prediction 117 144 - -
Vium164g00025 303 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vium164g00025 303 MobiDBLite consensus disorder prediction 170 190 - -
Vium164g00025 303 CDD SANT 71 114 IPR001005 -
Vium164g00025 303 FunFam MYB-related transcription factor 15 68 - -
Vium164g00025 303 CDD SANT 18 63 IPR001005 -
Vium164g00025 303 Gene3D - 15 68 - -
Vium164g00025 303 Gene3D - 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00025 Vium-Chr164 205192 207024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00025 3 295 MYB Transcription Factor Family AT5G62470 49.025 3.72e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium164g00025 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00025 K09422 - gmx:100812460 442.58