Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00024 ATGAAAAAGAGGCAGGTGGTGGTGAAGAGAGAATACGCCGCTTCTTCTGCGGTGGGGAATATTCGATACGGGGAGTGCCAGAAGAATCATGCAGCCAACACCGGAGGTTACGCAGTGGATGGTTGCAGGGAATTCATGGCTAGTGCCGGTGAGGGAACGACTGCTTCGCTTACATGTGCGGCTTGTGGCTGCCACAGGAACTTTCACAAGAAGGAAGTACTGCACGGAGTCAACTGA 237 0.5316 MKKRQVVVKREYAASSAVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTTASLTCAACGCHRNFHKKEVLHGVN 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00024 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
Vium164g00024 78 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Vium164g00024 78 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Vium164g00024 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00024 Vium-Chr164 180464 181354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00024 1 73 Zinc finger-homeobox gene family AT3G28917 60.714 1.97e-30 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium164g00024 ZF-HD_dimer 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00024 - - gmx:100797273 154.836