Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00021 ATGGACTCTCACCCTCTTATGAGTTGGAGCTCTTATTATCAGATAGAAGAAAACCCATTGCCATTTACGTGCCAGTTTTCTTACAGCGAAAACAGTGAAGTGTATCCTCCTCCACTACAAGATTTACCCATACAAGAATACCACCATGATGCTGTTCCTCTTACGGAGTATTACCCTTCTGATCCTTTATACGAAACGCTCGCCATCGAACCATCACCGACCCTGCGAGCAGACTGTGATTTTTATGATATATCTAAGGGGCTTCCTGTGTGGAACGAAGTGAATGCTGTGTTTGATTCGGAAGTCGATTTTTTATTTCGTAACAAGGAAGAAAGTTTGAAGGAGATGGTGGATGATAGAAAGGTTAACGAGGGGAGAGAAGAAATAACGAACCCTAGAAATAGCAGAAAGTTATCAAGGAAGACGATATCTGAGTACTTTTACATGCCAATAACACAAGCTGCCAGAGAAATGAATGTGGGGCTGACACTTTTGAAGAAAAGGTGCAGAGAGTTGGGTATCAGAAGGTGGCCCCACAGAAAGCTGATGAGCTTGCAAACTCTGATAAATAATGTGCAGGAGCTGCTGAAAGAGGAGGGGCCGGAGAGTGAAGAGAAGTTAAGATTTGCCATTGAGACATTGGAAAATGAAAAGAAGCTTTTGGAGGAAATGCCAGACATTGAACTGGAAGACAATACAAAAAGACTTAGACAGGCATGTTTCAAGGCCAACTACAAGAAAAGGAAGCTAGGACAAAGGGAACCAGAGTGTTCTTCTTGGAGTGGCGCGATGTCAGAATATAATAACGAAAGTGAAGAAGAACTGGATATGAAGTATCTCATTTCTCAGTTAGCTTAA 858 0.4196 MDSHPLMSWSSYYQIEENPLPFTCQFSYSENSEVYPPPLQDLPIQEYHHDAVPLTEYYPSDPLYETLAIEPSPTLRADCDFYDISKGLPVWNEVNAVFDSEVDFLFRNKEESLKEMVDDRKVNEGREEITNPRNSRKLSRKTISEYFYMPITQAAREMNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELLKEEGPESEEKLRFAIETLENEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPECSSWSGAMSEYNNESEEELDMKYLISQLA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00021 285 Pfam RWP-RK domain 138 185 IPR003035 -
Vium164g00021 285 Coils Coil 204 224 - -
Vium164g00021 285 ProSiteProfiles RWP-RK domain profile. 120 205 IPR003035 -
Vium164g00021 285 PANTHER PROTEIN RKD4 131 252 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00021 Vium-Chr164 146453 147630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00021 135 255 AtRKD Transcription Factor Family AT1G18790 71.311 2.04e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium164g00021 RWP-RK 4.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00021 - - gmx:100788666 382.489