Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00012 ATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTGTGCGACATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGTCTTGAAGCTTTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAGTGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGCTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATGTAGAGAAGATCAACAATTTAGAGCATCTGAGGCAAATGGAAGAGTCAATACGAGAATCAATCAATCGAGTCGGCCTGCAGAAGGAAAATTTAGGGAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGGCTTTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTCAGTGATAATACTAATAGAGAAGTTGAGTGTTCCACTGACATTTCACTTCCAAGCTATTCAAATTATATTGGGAGCAACAAACTTGAAGTTGAGCTCTCCCCAAGTGACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGCTAAATGGAACTACATATTTAAATGTACAACGTTGTGA 855 0.3825 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELSHQVRVLQAQLTEVHQRLSYWNNVEKINNLEHLRQMEESIRESINRVGLQKENLGKHQLISLECANQLQEGMALPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNREVECSTDISLPSYSNYIGSNKLEVGXLSPSDFGSRRWCNERAKWNYIFKCTTL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00012 285 Coils Coil 77 97 - -
Vium164g00012 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Vium164g00012 285 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vium164g00012 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 Coils Coil 114 134 - -
Vium164g00012 285 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Vium164g00012 285 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Vium164g00012 285 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vium164g00012 285 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00012 Vium-Chr164 96345 100716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00012 1 253 Type I MADS-box Gene Family AT2G03060 53.435 6.56e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium164g00012 SRF-TF 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00012 - - gmx:100811765 480.33