Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00010 ATGGAAAAGCTTTCGCTTCTTTCTAAGGACGACCATCACATGGATTTGCCTCCGGGCTTTCGCTTCCACCCCACTGATGAAGAGCTTATAACCCATTACCTCTACAAGAAGGTCATTGACACCAACTTCTCCGCTCGGGCCATCGGAGAAGTCGACCTCAACAAGTCTGAGCCTTGGGAATTGCCATGGAAAGCCAAAATGGGAGAGAAGGAGTGGTACTTTTTCTGTGTTAGAGACAGAAAATACCCTACTGGCTTGAGAACCAACAGGGCCACCGAAGCCGGTTACTGGAAAGCCACCGGGAAAGACAAAGAGATTTTCAGAGGCAAATCTTTGGTCGGAATGAAAAAGACTCTTGTTTTCTACCGAGGTCGAGCGCCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTTGAGGGGAAATTTTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATCTGCAGGGTGTTTCAGAAAAGTTCAGCCGGGAAGAAAACTCATATTTCTGGGATAATGAGGTTGGACTCTTTGGCCAATGAATTGGGTTCTTCTGCTCTTCCACCCCTTTCGGATTCTTCACCTTCTATTGGCAACACTAAACCACTCAACGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGACGGGGTCTTTGATTCCCTCAATAACTCTATTTATGGGGTTTCTCCAAATCCTATGGACTTTCTTCCCAGAATGCCACCTTCTACCTCGTTCTACTCTGCTCAAGGTGTTCAAGCTGTGCCTAATTTGACATTTCCCGGTTCTGTTTACTCTCTGCAGGACCACACCAATCTGAGAGCCATGTGTGAAAACAATGGTAATGGTTACAAGTCAGAGAGGGACATGATCAGTGTCTCACAGGAAACGGGTCTTACTACCGATATCAACCCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCACTTTGACAATCACATTCATCCTTCTGTTTCTGTTGCTCCGGTGGATCTTGATGGTTTGTGGAATTACTGA 1059 0.4618 MEKLSLLSKDDHHMDLPPGFRFHPTDEELITHYLYKKVIDTNFSARAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSLANELGSSALPPLSDSSPSIGNTKPLNESAYVPCFSNPIDVQRNQDGVFDSLNNSIYGVSPNPMDFLPRMPPSTSFYSAQGVQAVPNLTFPGSVYSLQDHTNLRAMCENNGNGYKSERDMISVSQETGLTTDINPETSSNFDMGRRHFDNHIHPSVSVAPVDLDGLWNY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00010 352 FunFam NAC domain-containing protein 100-like 25 170 - -
Vium164g00010 352 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vium164g00010 352 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Vium164g00010 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 248 - -
Vium164g00010 352 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Vium164g00010 352 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00010 Vium-Chr164 58676 60186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00010 14 352 NAC Transcription Factor Family AT5G07680 60.767 4.25e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium164g00010 NAM 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00010 - - gmx:100170719 645.195