Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00006 ATGGAAACTGAAATAATCCAGGGACCTTGGGGATTTCGCTGTCTACCCAAATTCATATTGTGCACCATTTCTGGGGCCCTCACCGTGTGTTTTGCCATTGCTGGTGCCATGACAGGAGCTATAGCCGGTGCTTTAGCAGCTAAGGCTACAAGGAGCGGTCTTCTCCGGGGAGTTTCTTTGGGTGCCATTGCCGGGTCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCATACTGGTGTATGGAACAAACTGGCTCACGGGGAGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGGGGGAGGCTTGTTGAGGAATCCCTTACACCAGCCATTTTAACTGCCTACAACTTGCAGGTTGGCATTGCTAATGCAGGCTATGATGAGATTCATGATGTTCATGGCTTAGTGGCACCGAGAGGATTGTCAGGAGATTCGCTCAAGAGGTTACCACACCATATGATCTCAAAGGATATGAAGGCAGAAAATACTTGTACAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCTTACCACGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCCTGTCCTGTCTGTAGGCAGAATGTGTAA 639 0.4695 METEIIQGPWGFRCLPKFILCTISGALTVCFAIAGAMTGAIAGALAAKATRSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQVGIANAGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKAENTCTICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00006 212 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Vium164g00006 212 Pfam Ring finger domain 165 209 IPR001841 -
Vium164g00006 212 SUPERFAMILY RING/U-box 154 212 - -
Vium164g00006 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 212 IPR013083 -
Vium164g00006 212 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 211 IPR044523 -
Vium164g00006 212 SMART ring_2 167 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00006 Vium-Chr164 30604 34250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00006 15 212 C3H Transcription Factor Family AT1G74410 57.000 4.59e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00006 - - gmx:100800105 381.333