Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00005 ATGGAAACTGAAATAATCCAGGGACCTTGGGGATTTCGCTGTCTACCCAAATTCATATTGTGCACCATTTCTGGGGCCCTCACCGTGTGTTTTGCCATTGCTGGTGCCATGACAGGAGCTATAGCCGGTGCTTTAGCAGCTAAGGCTACAAGGAGCGGTCTTCTCCGGGGAGTTTCTTTGGGTGCCATTGCCGGGTCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCATACTGGTGTATGGAACAAACTGGCTCACGGGGAGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGGGGGAGGCTTGTTGAGGAATCCCTTACACCAGCCATTTTAACTGCCTACAACTTGCAGTTTGAGCAGGTTGGCATTGCTAATGCAGGCTATGATGAGATTCATGATGTTCATGGCTTAGTGGCACCGAGAGGATTGTCAGGAGATTCGCTCAAGAGGTTACCACACCATATGATCTCAAAGGATATGAAGGCAGAAAATACTTGTACAATATGTTTGCAGGATATTGAAGTAGGCGAAATTGCAAGAAGCTTACCACGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCCTGTCCTGTCTGTAGGCAGAATGTGTAA 648 0.4691 METEIIQGPWGFRCLPKFILCTISGALTVCFAIAGAMTGAIAGALAAKATRSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANAGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKAENTCTICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00005 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 215 IPR013083 -
Vium164g00005 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 214 IPR044523 -
Vium164g00005 215 SUPERFAMILY RING/U-box 157 215 - -
Vium164g00005 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Vium164g00005 215 SMART ring_2 170 211 IPR001841 -
Vium164g00005 215 Pfam Ring finger domain 168 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00005 Vium-Chr164 30604 34250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00005 15 215 C3H Transcription Factor Family AT1G74410 56.158 3.04e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00005 - - gmx:100800105 392.889