Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00002 ATGGATGCCGATACTGAGACTGAGGAAATTATTAATTTGAACAATAAAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGAGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACACTTCTTTTGAGGTGTTCTTATCAGGTTACTTCAGTAAAATCGGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGATACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACCGTAGTATCAATCCAACAAGAAGAAGAGGTTAATATTGCCGCCGCCACCAATGTTGTGGTGGAGCTTCCCAGTGCTCTTGTCTCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGCAGAACAGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAAAGCAACATTGAAGAGACTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGAAACATGTGAATCAAGCATGTGGTGAACAGGATGGTAATGACCTAAATACACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCATGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTGTGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACGTTCTCGGGGAGTAATGCATCCAATAAATGGAAGTCACGGTTCCGATCCTGCTCAACATGCTTATCCATATTGCATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCTGGTTCTTCCGTGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCAAGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCGTTAGGAAGTTCAAGTTCATGTGAAGTGAAATCAAGCAAGGTTGATAGGAGAGAAGCAGCACTGATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTGAGAAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAACCTACTTCCACTGATTATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTGAGGATGCTTGA 1671 0.4117 MDADTETEEIINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEEEVNIAAATNVVVELPSALVSEYQPDVPGISDRRTGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETAHVDNTTTEVRVKHVNQACGEQDGNDLNTHENGEMFENHSQDDLPSSNSIHDSFSIERSCTPPASVEVSQQKHYREERSRGVMHPINGSHGSDPAQHAYPYCISGVVNHVMMPSSAQMYQKNIQDLQSHSGSSVIAQYNHLPQCPPQASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVDVDLNGQPTSTDYDEEEEDNHVARDFSPEDA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00002 556 MobiDBLite consensus disorder prediction 526 556 - -
Vium164g00002 556 Gene3D - 37 235 - -
Vium164g00002 556 SMART REC_2 37 152 IPR001789 GO:0000160
Vium164g00002 556 Pfam CCT motif 479 521 IPR010402 GO:0005515
Vium164g00002 556 MobiDBLite consensus disorder prediction 185 206 - -
Vium164g00002 556 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Vium164g00002 556 SUPERFAMILY CheY-like 35 163 IPR011006 -
Vium164g00002 556 MobiDBLite consensus disorder prediction 325 354 - -
Vium164g00002 556 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Vium164g00002 556 MobiDBLite consensus disorder prediction 306 355 - -
Vium164g00002 556 ProSiteProfiles CCT domain profile. 479 521 IPR010402 GO:0005515
Vium164g00002 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 245 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00002 Vium-Chr164 2146 7740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00002 26 555 Response Regulator Gene Family AT5G61380 49.204 1.70e-175 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium164g00002 Response_reg 1.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00002 K12127 - gmx:100786522 963.755