Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00001 ATGGATGCCGATACTGAGACTGAGGAAATTATTAATTTGAACAATAAAGCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGAGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTTACACTTCTTTTGAGGTGTTCTTATCAGGTTACTTCAGTAAAATCGGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCGGTGAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGGGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGACGCATGCTTGGACTTGTGGAGAACAACATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGATACAGATGACAAGTCCAAAAGAAGCACTAATCCAGAGACCGTAGTATCAATCCAACAAGAAGAAGAGGTTAATATTGCCGCCGCCACCAATGTTGTGGTGGAGCTTCCCAGTGCTCTTGTCTCAGAATATCAGCCTGATGTGCCTGGAATAAGTGATCGCAGAACAGGTACTCCAATACAGCATCCATCATGCAGCAGAACTAATATTGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAGCACTGAAAAGCAACATTGAAGAGACTGCTCATGTTGACAATACTACTACAGAAGTTAGGGTGAAACATGTGAATCAAGCATGTGGTGAACAGGATGGTAATGACCTAAATACACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCATGATTCTTTTTCTATTGAGAGATCTTGTACTCCACCTGCATCTGTGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACGTTCTCGGGGAGTAATGCATCCAATAAATGGAAGTCACGGTTCCGATCCTGCTCAACATGCTTATCCATATTGCATTTCAGGAGTTGTTAATCATGTTATGATGCCATCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCTGGTTCTTCCGTGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCAAGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCGTTAGGAAGTTCAAGTTCATGTGAAGTGAAATCAAGCAAGGTTGATAGGAGAGAAGCAGCACTGATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTTGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTGAGAAAGTTGAATGGTGTTGATGTGGATCTTAATGGACAACCTACTTCCACTGATTATGATGAAGAGGAGGAAGACAACCATGTAGCAAGAGATTTCTCTCCTGAGGATGCTTGA 1713 0.4116 MDADTETEEIINLNNKASNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFELVASDPSDANTNSTTLFSDDTDDKSKRSTNPETVVSIQQEEEVNIAAATNVVVELPSALVSEYQPDVPGISDRRTGTPIQHPSCSRTNIGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEETAHVDNTTTEVRVKHVNQACGEQDGNDLNTHENGEMFENHSQDDLPSSNSIHDSFSIERSCTPPASVEVSQQKHYREERSRGVMHPINGSHGSDPAQHAYPYCISGVVNHVMMPSSAQMYQKNIQDLQSHSGSSVIAQYNHLPQCPPQASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKSSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVDVDLNGQPTSTDYDEEEEDNHVARDFSPEDA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00001 570 ProSiteProfiles CCT domain profile. 493 535 IPR010402 GO:0005515
Vium164g00001 570 SMART REC_2 37 152 IPR001789 GO:0000160
Vium164g00001 570 MobiDBLite consensus disorder prediction 185 206 - -
Vium164g00001 570 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Vium164g00001 570 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Vium164g00001 570 MobiDBLite consensus disorder prediction 540 570 - -
Vium164g00001 570 MobiDBLite consensus disorder prediction 337 368 - -
Vium164g00001 570 Gene3D - 37 234 - -
Vium164g00001 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 244 IPR045279 GO:0009736
Vium164g00001 570 Pfam CCT motif 493 535 IPR010402 GO:0005515
Vium164g00001 570 SUPERFAMILY CheY-like 35 163 IPR011006 -
Vium164g00001 570 MobiDBLite consensus disorder prediction 339 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00001 Vium-Chr164 2146 7745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00001 26 569 Response Regulator Gene Family AT5G61380 49.289 4.40e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vium164g00001 Response_reg 1.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00001 K12127 - gmx:100786522 988.023