Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1646g00026 ATGGGTAACTGCAGCAGCAGCAGCAACGGCGGCGGTGCCGCCTCCTCAACCACCACTTACTACGACGACCTTCCCCAGCGCAACGGCATCACCGTCCTACCTCCGAACACGAACCCTTCACCCCCACCCCCGAAGCCACAAGCGTCGTCCTCGCTGGGCCGGGTGCTGGGCCGTCCCATGGAGGATGTCCGGTCAATTTACATCTTCGGGCGCGAGCTGGGCCGCGGGCAGTTCGGCGTGACGTACCTGGTGACCCACAAGACCACGAAGGAGCAGTTCGCGTGCAAGTCGATCGCAACGCGCAAGCTCGTGAACCGCGACGACATCGACGACATCCGGCGCGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAATCTCATCATGGAGCTCTGCGCTGGCGGCGAGCTCTTCGACCGGATTATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTGACGGTGGTGCATAATTGCCATTCCATGGGCGTGATGCACAGGGACTTGAAGCCCGAGAATTTCTTGCTGCTCAACAAGGACGATGATTCCCCTCTCAAGGCCACGGATTTTGGTCTCTCCGTCTTCTTCAAGCCAGGAGATGTGTTTAGAGACCTTGTTGGAAGTGCTTACTATGTTGCTCCTGAGGTGTTGAAAAGAAGTTATGGGCCTGAGGCTGATATTTGGAGTGCTGGGGTTATACTGTACATTCTGCTTTCTGGTGTTCCACCTTACTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCGGATCCTTGGCCTTCCATATCAACTAGTGCTAAAGATCTGGTCAAGAAGATGCTACGTGCTGACCCTAAAGAACGACTTTCAGCAGTTGAAGTGCTAAATCATCCCTGGATGAGAGTGGATGGAGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTCCGAGCAATGAACAAACTAAAAAAAGTAGCCCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATCGGCTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACATTTGAGGAGTTGAAAGCTGGTCTCCCAAAACTGGGTAGTAAACTTTCTGAGTCCGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCATCTATATAAAGCCTTTGAATATTTTGACGATGATAAGAGCGGTTACATCACAATGGAAGAGTTGGAATCTGCCCTCAAGAAGTACAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATACTGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAAACCACATAACCCAAAGACGTCGCAAATAA 1563 0.4952 MGNCSSSSNGGGAASSTTTYYDDLPQRNGITVLPPNTNPSPPPPKPQASSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKTTKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKDDDSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLKRSYGPEADIWSAGVILYILLSGVPPYWAENEQGIFDAILRGHIDFASDPWPSISTSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDDDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDINHITQRRRK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1646g00026 520 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Vium1646g00026 520 Gene3D - 333 510 - -
Vium1646g00026 520 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Vium1646g00026 520 SUPERFAMILY Protein kinase-like (PK-like) 41 344 IPR011009 -
Vium1646g00026 520 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vium1646g00026 520 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1646g00026 520 Pfam Protein kinase domain 69 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1646g00026 520 Gene3D Transferase(Phosphotransferase) domain 1 153 332 - -
Vium1646g00026 520 Pfam EF-hand domain pair 373 433 IPR002048 GO:0005509
Vium1646g00026 520 Pfam EF-hand domain pair 443 505 IPR002048 GO:0005509
Vium1646g00026 520 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Vium1646g00026 520 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Vium1646g00026 520 CDD STKc_CAMK 67 324 - -
Vium1646g00026 520 ProSiteProfiles EF-hand calcium-binding domain profile. 440 474 IPR002048 GO:0005509
Vium1646g00026 520 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Vium1646g00026 520 SUPERFAMILY EF-hand 364 506 IPR011992 -
Vium1646g00026 520 MobiDBLite consensus disorder prediction 1 34 - -
Vium1646g00026 520 SMART efh_1 408 436 IPR002048 GO:0005509
Vium1646g00026 520 SMART efh_1 444 472 IPR002048 GO:0005509
Vium1646g00026 520 SMART efh_1 479 507 IPR002048 GO:0005509
Vium1646g00026 520 SMART efh_1 372 400 IPR002048 GO:0005509
Vium1646g00026 520 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1646g00026 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 500 - -
Vium1646g00026 520 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Vium1646g00026 520 FunFam Calcium-dependent protein kinase 1 333 508 - -
Vium1646g00026 520 FunFam calcium-dependent protein kinase 1 153 332 - -
Vium1646g00026 520 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Vium1646g00026 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vium1646g00026 520 FunFam Calcium-dependent protein kinase 1 69 152 - -
Vium1646g00026 520 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1646g00026 Vium-Chr1646 265510 271540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1646g00026 53 519 EF-hand Containing Proteins AT4G23650 80.728 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1646g00026 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1646g00026 K13412 - gmx:100777096 956.436