Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1646g00022 ATGGAACAGAAAAGCATTCTTATATCGGCTTTGGGTGTCGGGGTGGGTGTTGGAGTGGGCATTGGATTGGCTTCTGGACAAGGCGTTGGCAAATGGGTAGCCAACACTTCTTCCTCAAACACTATCACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTCGAGAAATTCCCTTATTATCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGTGGCTTATGTCCATTTAAAGCATGCTGATGTTTCTAAATATACACGGAATCTTGCTCCTGCAAGCAGAACTATTCTGCTCTCAGGGCCAGCAGAGCTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTATTTTGAGGCCAAGTTACTGCTGTTAGATTTAACCGACTTTTCATTGAAGATTCAGAGTAAATATGGTTCTTCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCTACTTTGGAACGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGCAAGAACTTAAAGGAAAAATGCACAGGCCTAGCAGTGTAATAGACCTCCAATCAATGGGTGCCGAAGCATCTTGTAATCCTCCACCACTCCGTAGGAATGCTTCTTCCTCTTCAAACATAAGTGGCCTTGCTTCCCAAACCAATGCTACAAATTCAGCTTCTCTGAAGCGCGCAACCAGCTGGTCTTTTGACGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTAGTTTTCGTGTCAAAAACCTATCCCATTGTGCTATATTTGCGGGATGTTGATAAGCTGTTATACAAATGGCAAAAAATATATTACTTGTTCCAGAAAATGTTGAAAAAACTATCTGGGTCCATTTTGATTCTTGGTTCACGAGTTATAGATTGTGGCAATGAATATGAAGAGGTGAATGAGAAGCTTGATTCACTCTTCCCATACACCATAGAAATCAGGCCACCAGAAGATGAGTCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTAAGGATAACAAAATTCATATCATGGAAGTCCTTGCAGCAAACGATCTCGATTGTGATGACCTAGATTCCATATGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAGATCATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACCCTGAATACAGAAATGGCAAGCTCGTCATCTCTTCCAATAGCTTGTCCCATGCATTGAGTATATTCCACAAGGGCAAATCCAGTAGAGGAGACACATTAAAATTAGAAGATCAAGCTGTAAAATCAGAGAAAATAAGCGAGGAAGGAACTGATATGAAATCAGAAGCAAAGTCTGAAAATGCTGCTCCTGTAAAAAAGGCTGAAGCAGAAATATCAACTTCGGTGGGGAAGGCGGATGGTGAAAAATCAGTTCCTGCTCCCAAAGCCCCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAATGAGATTAATGTTACATTCTCTGACATTGGTGCCTTGGATGAGACCAAAGAATCCCTTCAAGAACTAGTGATGCTTCCTCTTCGAAGGCCGGACCTTTTCACCGGGGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACTGGGAAGACCATGCTGGCAAAGGCCATTGCAAAGGAGGCTGGAGCAAGTTTCATCAATGTTTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTCTATTCACACTTGCTGCCAAGGTCTCCCCAACTATTATATTCGTGGATGAGGTTGATAGCATGCTTGGTCAACGAACCAGAGTAGGGGAGCATGAAGCCATGAGGAAAATAAAGAATGAATTTATGACCCATTGGGATGGACTTTTGACAAAGCCAGGAGAGAGAATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGATCTCGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTAGGACTACCGTCTGTGGAAAACAGGGAAAAGATTTTGAAGACTCTTTTAGCAAAAGAGAATATGGACAGCGAACTTGATCTTAAGGAACTTTCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTGTGCACAACTGCTGCTTATCGGCCCGTTAGAGAGCTAATTCAGCAAGAGAGACTAAAGAGTTTGGATAAAAAGCAGAAAGCTGCCAAGAGACAGAATGAAGATGTCCAAGATAGTGAAGGTGGACAAGAAATTGACCAAGAAATAGTTATTGCCCTTAGACCGTTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGGGTGAGTTGAAACAATGGAATGATTTGTATGGAGAAGGGGGTTCAAGGAAGCAGCAGCAGTTGTCTTACTTCCTATGA 2520 0.419 MEQKSILISALGVGVGVGVGIGLASGQGVGKWVANTSSSNTITAEKMEQEMLRQVVDGRESNVTFEKFPYYLSEQTRVLLTSVAYVHLKHADVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQRQELKGKMHRPSSVIDLQSMGAEASCNPPPLRRNASSSSNISGLASQTNATNSASLKRATSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLYKWQKIYYLFQKMLKKLSGSILILGSRVIDCGNEYEEVNEKLDSLFPYTIEIRPPEDESHLVSWKSQLEEDMKMIQVKDNKIHIMEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISYHLMKNKDPEYRNGKLVISSNSLSHALSIFHKGKSSRGDTLKLEDQAVKSEKISEEGTDMKSEAKSENAAPVKKAEAEISTSVGKADGEKSVPAPKAPEVPPDNEFEKRIRPEVIPANEINVTFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKENMDSELDLKELSTMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAKRQNEDVQDSEGGQEIDQEIVIALRPLNMQDFKEAKNQVAASFAAEGAGMGELKQWNDLYGEGGSRKQQQLSYFL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1646g00022 839 Gene3D - 694 773 - -
Vium1646g00022 839 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 838 - -
Vium1646g00022 839 MobiDBLite consensus disorder prediction 204 227 - -
Vium1646g00022 839 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Vium1646g00022 839 Gene3D - 521 693 IPR027417 -
Vium1646g00022 839 MobiDBLite consensus disorder prediction 441 472 - -
Vium1646g00022 839 MobiDBLite consensus disorder prediction 441 504 - -
Vium1646g00022 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 354 IPR027417 -
Vium1646g00022 839 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Vium1646g00022 839 Pfam AAA+ lid domain 716 753 IPR041569 -
Vium1646g00022 839 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Vium1646g00022 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 759 IPR027417 -
Vium1646g00022 839 SMART AAA_5 558 695 IPR003593 GO:0016887
Vium1646g00022 839 MobiDBLite consensus disorder prediction 211 227 - -
Vium1646g00022 839 Coils Coil 754 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1646g00022 Vium-Chr1646 226477 232223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1646g00022 522 772 Calmodulin-binding Proteins AT3G56690 38.583 6.42e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1646g00022 - - gmx:100807464 1431