Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1646g00008 ATGGATGAATTTGAGTGCATGAGGGATTGGGATTTGGAGGCTATCGTGAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCGAATCCTGATTTTTCTTATTTCTTCTCTGACCAAGACGAGCTGCTCGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTCCTTGATGATCTCGAAGATCTCTATAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCACACCATCGTTACAACTTCCTTATCTATCCCCATAGAACCCCAACAGGTCAAAGAACTCAAAGCATCAGAAGAGAAAGTAGCCCTACAGGGTTTGAAAGCCCCCCCAACACCAAAGTGTAAAAAAGGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCTCCGTATCCAAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCTGTTTTCTTGGTTACCTACACTGCTGAACACAGCCATCCTCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACGAGGAAGAACAATTCCCTAATTCCCCCTCCAACAACCACTCGCAACCATAACACTACTTGTTCTTCAAGGACGCCTTTGATGGTTCAATCCATTGAAGATAAGCTTGTAACGAGTGTGCAACAAAGCATGGACCTGAAGAAAGAGGAACAACATTTTGTTGAGTGGTTCGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCGACCTCAGATCTGGAGAAGTTTATCGGATTTGAATGCCAACATTTTGCACTGGATGGAGGTTTCACCGATGGTTATGCACACTCTTGA 915 0.459 MDEFECMRDWDLEAIVRGSSGEATAMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPHTIVTTSLSIPIEPQQVKELKASEEKVALQGLKAPPTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLIPPPTTTRNHNTTCSSRTPLMVQSIEDKLVTSVQQSMDLKKEEQHFVEWFDDGAQFGDAWIPTSDLEKFIGFECQHFALDGGFTDGYAHS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1646g00008 304 MobiDBLite consensus disorder prediction 194 226 - -
Vium1646g00008 304 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 78 229 IPR044810 GO:0003700
Vium1646g00008 304 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1646g00008 304 MobiDBLite consensus disorder prediction 200 226 - -
Vium1646g00008 304 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1646g00008 304 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1646g00008 304 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1646g00008 304 FunFam WRKY transcription factor 22 120 191 - -
Vium1646g00008 304 Gene3D WRKY domain 121 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1646g00008 Vium-Chr1646 78515 80301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1646g00008 1 273 WRKY Transcription Factor Family AT4G23550 44.681 2.41e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1646g00008 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1646g00008 K13426 - gmx:102663255 457.603