Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1645g00006 ATGGGAAGAAGCTCTCCAGTTTCACTCATTACCTACATCTTTGTCCTGCAATGGTTAACATGGTCAAGGGTGCTTCTGGCTGATGAAAGAAGCCATTGCTCAAGTTCCATAATGAACATAGGTGCTGTGCTTGATTTGAGTTCACAGATTGGAAAACATCAGAAAATAGGCATGGAAATTGCAGTCCAAGACTTCAATCGGTTCAGTAGTTCCAAGCTGGATTTGAAGATAAGAAACTCCAATGGAAATTCAGCTCAAGCAGTTGCTAGTGCTATGGATCTCGCCCTAAGCAAGCAAGTGCTAGCCATCATAGGTACAATAACACACAATGAAGCAACTCTCGCAAGTGAATTTAATGACAAAATAAAAAATATTCCTATCTTGTCTCTAATTTCATCTGTAACCAGCGCAGAGCAAGTATCACCTCTATTGCCTCACTTCAACCAAGTGGGATATAATATTAACCTTCAAATGCAATGCATTGCAGCCATTGTAGGAGAATTTAGATGGACAAAGGTTACAGCAATCTATGAACTTGATAACAGGTTTTCCTCTGATCCTGGAATCCTACTCGACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGACAATCATGTAGCTTTGCCTCCATTGTCCTCTCTATTAAACCCAAATTCTACCATTGAAAATGAGCTTAATAGGCTAAAAAGCAGGAGTAACAGGGTCTTCTTGATTTTGCAATCTTCTTTAGAGCTCGCTAACCTACTTGAGAAAGCAAAGCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATTATCCCAGATGGGATTGCTGGTCATCTTGATTCAGTTAACCCGTCTGCTATCTCTAACATGCAAGGAGTTATTGGATTTAAGACACCCTTCTTGGAAACAAGCAAGGCATTTAGACGGTTCAAGTTAAAATTTCGTAGAAGGTTTGTCTTCGAGTTCCCAGAAGAAGAGAACATTAACCCAAGTTCCTTTGTACTTCAATCGTATAATGCAACCTGGGAGGTTGCTCAAGCTGCAGAGGAATCAAAAGGGAAGTTAACCCTTGAACAATTATTAAAAAGTAAAATCTCCATGAATGAAAAATTACGGCAATCACCAACCCTCAGCATAATTAACGTGGTAGGAAAAAGTTACAGGGAGTTGGCATCATGGTCTCCCGCATCAGGTTTCTCCAAAACACTTGTTACAGAACAGATGACAGAGATGAACACAAACAGTGCTTCAAGTGGAGTTTTGAGCACAGTTTATTGGCCAGGAGGCATACAATTTGTTCCTAAGGGATGGACTCACAACACCATAGAGAGGACATTACAAATAGGAGTTCCTGCAAATGCTGCATTTACTGATTTCGTGAATGTGGAATATGATGTTGAGAGGAACGAAACTTCTTTTACCGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCAAACTTTGCGTTATAATTTGAGTTTCTCGTTTGTTCCCTTCGATGGATCTTATGATGAAATGGTAGGCCAAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACATCTATAATTGCATACAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGCATTGATATGGTGGTTACAGAGCAGTCAGCTAAATTAAAGGAAACATGGCTTTTTTTACAAGTCTTCACAAAAGAGATGTGGTTAATGATGGTAGCATTACACATTTTTGTGGGACTCGTCATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAGAGAGTTCGGGTCCATGCTTTGGTTCTTAGTCACCGTAATATTCTTTGCACAGAGAGAACAAATTAGAAGCCCCTTGGCTCGAATTGTGCTGGCACCATGGTTATTTGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACATCTATGATGACTGTTTCACAACTAGAGCCATCTGTGGTAAAAGTCCAGACCCTTCTGAAAAGAAATTCTGTAGTTGGTTGTAATGGAAATTCGTTCATTTTGAAGTATTTGACTGAGGTACAAAAATTCAAGCCTGAGAACATTAGGAAAATTAAGTCTGTAAATGATTACCCTGATGCCTTTCGGAACAAAGATATCGAAGCTGCTTTCTTTATTACACCTCACGCTAAGGTCTTTTTGGCAAAGTACGCATGCAGGGGTTTTATCAAAGCAGGGAACACTTTCAGGCTTGGCGGCTTGGGTTATGTATTTCCCAAGGGTTCAAATCTGGCTACTGACATATCCGAAGCATTGCTGAAAATGATAGAGAGTGGACAGACCGAACAACTAGAAAAAGACATGCTAATGGTAGAAGTCAATCGCAGTTGTCCTACTTTAGAGAGCGAGAAAAAAAATAGGTCATCGACTGGTTTTCGACCTTTCCTTGGCCTATTTTGCATCTGTTCTATTGTTGCTATTCTGGCATCGTTATATAGTATGATTTATTGGTTGATGAACAAGGTAGAGACCTTCACTAGCTACATGCATGTAAGATTGACACTATTAGGGAGAATGTGGAGATGCACAAACACAGTTTTTTTCTGGGAGCTGCTCAAGACTTCAATCAGGAAGTGTAAACCCGACATAGTAACAATAAATGCAGAGGACACAGTCATTGATAGTCAGCATAGTACAGTGGTTATAGTGTAG 2673 0.3988 MGRSSPVSLITYIFVLQWLTWSRVLLADERSHCSSSIMNIGAVLDLSSQIGKHQKIGMEIAVQDFNRFSSSKLDLKIRNSNGNSAQAVASAMDLALSKQVLAIIGTITHNEATLASEFNDKIKNIPILSLISSVTSAEQVSPLLPHFNQVGYNINLQMQCIAAIVGEFRWTKVTAIYELDNRFSSDPGILLDLSYSLRLVGSEIDNHVALPPLSSLLNPNSTIENELNRLKSRSNRVFLILQSSLELANLLXEKAKQMGLMGKGSVWIIPDGIAGHLDSVNPSAISNMQGVIGFKTPFLETSKAFRRFKLKFRRRFVFEFPEEENINPSSFVLQSYNATWEVAQAAEESKGKLTLEQLLKSKISMNEKLRQSPTLSIINVVGKSYRELASWSPASGFSKTLVTEQMTEMNTNSASSGVLSTVYWPGGIQFVPKGWTHNTIERTLQIGVPANAAFTDFVNVEYDVERNETSFTGFSIDVFKAAVQTLRYNLSFSFVPFDGSYDEMVGQVYNKTLDAAVGDTSIIAYRYHLVDFSQPYVESGIDMVVTEQSAKLKETWLFLQVFTKEMWLMMVALHIFVGLVIWLIERQVNAELREFGSMLWFLVTVIFFAQREQIRSPLARIVLAPWLFVILIATSTFTASLTSMMTVSQLEPSVVKVQTLLKRNSVVGCNGNSFILKYLTEVQKFKPENIRKIKSVNDYPDAFRNKDIEAAFFITPHAKVFLAKYACRGFIKAGNTFRLGGLGYVFPKGSNLATDISEALLKMIESGQTEQLEKDMLMVEVNRSCPTLESEKKNRSSTGFRPFLGLFCICSIVAILASLYSMIYWLMNKVETFTSYMHVRLTLLGRMWRCTNTVFFWELLKTSIRKCKPDIVTINAEDTVIDSQHSTVVIV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1645g00006 891 FunFam Glutamate receptor 157 326 - -
Vium1645g00006 891 Gene3D - 557 695 - -
Vium1645g00006 891 SUPERFAMILY Periplasmic binding protein-like II 419 774 - -
Vium1645g00006 891 Gene3D - 157 327 - -
Vium1645g00006 891 Pfam Ligand-gated ion channel 775 812 IPR001320 GO:0015276|GO:0016020
Vium1645g00006 891 FunFam Glutamate receptor 555 688 - -
Vium1645g00006 891 PIRSF IGluLR_plant 351 849 IPR017103 -
Vium1645g00006 891 PIRSF IGluLR_plant 7 357 IPR017103 -
Vium1645g00006 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 827 IPR015683 -
Vium1645g00006 891 Pfam Receptor family ligand binding region 56 360 IPR001828 -
Vium1645g00006 891 Gene3D - 437 556 - -
Vium1645g00006 891 CDD GluR_Plant 442 777 - -
Vium1645g00006 891 SMART GluR_14 443 775 IPR001320 GO:0015276|GO:0016020
Vium1645g00006 891 FunFam Glutamate receptor 439 554 - -
Vium1645g00006 891 Gene3D - 35 156 - -
Vium1645g00006 891 Pfam Bacterial extracellular solute-binding proteins, family 3 468 774 IPR001638 -
Vium1645g00006 891 SUPERFAMILY Periplasmic binding protein-like I 33 435 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1645g00006 Vium-Chr1645 64383 70992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1645g00006 12 819 Ion Channels AT2G29120 30.058 2.08e-110 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1645g00006 - - gmx:100778941 1304.66