Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1645g00005 ATGGGAGGGACTATCTTCTTCTTTGTGTTGCATTTGTTTGCATGGCCAGGGTTTCTACTGGCTAATGAAACAACACACCAGTGCCTAAGCACTCGTATTAAGAACATAGGTGTTGTTCTTGATTTGGATTCACTAATGGGTAAGCAACAGAAAGTAGCCATGGAAATTGCAGTCCAAGAGTTCAATAGCTTCGGTTGTTCAAAGCTGGAATTGAATATTCAAAATTCCAAGGGGATTTCGGCTACAGCAATATCCACTGCTTTGAATCTCACACAGAGCAAGCAAGTGCTTGCCCTCATTGGAACAATAACACACAATGAAGCAACAATTGCAAGTGAGTTAAATGACACCATAAAGAATATTCCTATACTGTCTCTGACTTCCCCCACATCCAACATGGAGATGTTGTCTCCACAATTGCCAAACTTCATCCAATTTGGCAATGATATCAAGATTCATATGCAATGCATTTCAGCCATTGTAGGAGAATTCAGATGGAGAAAGGTGACAACAATCTATGAACTCAATAACATGTTTTCCTTTGATCCAGAAATGGTACTTGACCTCTCCTATTCTCTTAGACTTGTTGGCTCTCAGATTGATGATCATTTACAGTTCCCTTCATTGCCCTACCTCTCAGACCCAAAATCTACCATTGAAAATGGGCTTAAAAAGCTTAAAAGAAAAAGTAATAGGGTCTTCTTGATTCTGCAATCTTCTTTGGAAATGGCTAACATACTATTTGAGAAAGCAAAACAAATGGGTTTGATGGAAAAAGATTCTGTTTGGGTTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCGGTTAACTCAACTGTTATCATTAACATGCAAGGAGTTATTGGATTTAAGACACATTTCATTGAAACAAGTGAAAAATTTAGGAGATTCAAGTTTAAATTTCGAAGAAGATTCGCATTGGAGTTCGCTGAAGAAGATAATATTAGCCCGAGTTTCTTTGCACTACAATCGTATGATGCAACTTGGGTTGTTGCTCAGGCTACAAGGAAATCACAGTGGAAGTTTAACCTTGAACAATTATCTAAAACTAATCTCTCCAACAATAGAAAATTACAACAATCACCAATCTTCAGCATAATTAATGTGATAGGTAAAAGCTACAGAGAGTTGGGATTATGGTCTCCAGAACTAGGTTTGACAAAAAGCCTTGTTACAGAACAACTACGAGAGATAATGAAGACACATGGTGCTTCAACTAAAGTTTTGAGTACAATTTATTGGCCAGGTGGCTTGCAGTTTGTTCCTAAGGGATGGACTCACAACACTAAGGAGAAGATATTGCAAATAGCAGTGCCTGCAAATGGTGTCTTTCATCAATTTGTAAATGTGACATATGATCAAAACACAAATAACACTTCTATTACCGGTTTCTCAATTGATGTCTTCAAAGCAGCCATTAATACTTTGCCTTATGACTTGAATTACACATTTGTTCCCTTCAATGGTTCTTATGATGAAATGGTAGAGAAAGTCTACAATAAGACATTGGATGCTGCTGTCGGAGATACATCAATAATGGCATACAGATATCATTTAGTGGACTTCTCACAACCATATCTTGAATCTGGCCTGAACATGGTGGTTCCAGAGCAATCAAAAAAATCAAAGGAAGCATGGATGTTTTTTGATGCCTTCACGAAAGAGATGTGGTTGATGATGACAACACTGCACATTTTTGTTGGATTGGTCATTTGGTTGATTGAGAGGCAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACATAGAGAACCAATTAGAAGCCCTTTGGCTCGAACTGTAATGGCACCATGGTTATTCGTTATCCTCATTGCAACCAGTACTTTCACAGCAAGTTTGACTTCAATGATGACTTTTTCACAGCTAGTGCCATCTGTTTTAGATATCCAAACCCTTCAGAAAAGAAATTCCCCGGTTGGTTGTAATGGAAATTCATTCATTGTGAAGTATTTGACTGAGGTACTAAATTTCAAGCCAGAGAACATCAGAAAAATTTACTCCGTAAGTGATTACCCTAATGCCTTTCAAAATAAGTATATTGAAGCAGCTTTCCTTAGTACGCCTCATACAAAGGTATTTCTGGCAAAGTACTCCTGCAAGGGTCTCATCAAAGCAGGCAACACTTTCAAGCTTGATGGCATAGGTTTTGTATTTCCAAAGGGTTCCAATCTGGCTGCCGACATATCTGAGGCATTGCTGAAAGTGATAGAGAGTGGAGAGATAGAAGAACTAGAAAAAGAGATGTTAGGAGGCAATTCAAGTTGCTCTCCTTTACATAACAAAATGAAAGATGGGTCATCAACAGGATTTCAACCTTTCCTTGGCCTATTTTGCATCTGTGCTGTTGTTTCTATTTTAGCATTGTTATATAATATGATTTGTGTGTTCATGAATGATGTAGAGACATTCACTAACTATATACATGTAACATTGACACCATTGAGGAGAATCTATATATGGACAAGTGCATCTTTTACATGGATTTGTTCAACACTACAATGGGGGAGTATTAGAAGTGTAATTACTACCACAATAACAGGAAATGCAGAGGAGACTACCATTAATAGTCAACAAAGTACCATGGCTGTTGAGGTCACTGATGTTGTATTGGCTTCTCATTCTTCCTAA 2703 0.3788 MGGTIFFFVLHLFAWPGFLLANETTHQCLSTRIKNIGVVLDLDSLMGKQQKVAMEIAVQEFNSFGCSKLELNIQNSKGISATAISTALNLTQSKQVLALIGTITHNEATIASELNDTIKNIPILSLTSPTSNMEMLSPQLPNFIQFGNDIKIHMQCISAIVGEFRWRKVTTIYELNNMFSFDPEMVLDLSYSLRLVGSQIDDHLQFPSLPYLSDPKSTIENGLKKLKRKSNRVFLILQSSLEMANILFEKAKQMGLMEKDSVWVIPDGVASLLDSVNSTVIINMQGVIGFKTHFIETSEKFRRFKFKFRRRFALEFAEEDNISPSFFALQSYDATWVVAQATRKSQWKFNLEQLSKTNLSNNRKLQQSPIFSIINVIGKSYRELGLWSPELGLTKSLVTEQLREIMKTHGASTKVLSTIYWPGGLQFVPKGWTHNTKEKILQIAVPANGVFHQFVNVTYDQNTNNTSITGFSIDVFKAAINTLPYDLNYTFVPFNGSYDEMVEKVYNKTLDAAVGDTSIMAYRYHLVDFSQPYLESGLNMVVPEQSKKSKEAWMFFDAFTKEMWLMMTTLHIFVGLVIWLIERQVNAELKGLGSMLWFLVTVIFYAHREPIRSPLARTVMAPWLFVILIATSTFTASLTSMMTFSQLVPSVLDIQTLQKRNSPVGCNGNSFIVKYLTEVLNFKPENIRKIYSVSDYPNAFQNKYIEAAFLSTPHTKVFLAKYSCKGLIKAGNTFKLDGIGFVFPKGSNLAADISEALLKVIESGEIEELEKEMLGGNSSCSPLHNKMKDGSSTGFQPFLGLFCICAVVSILALLYNMICVFMNDVETFTNYIHVTLTPLRRIYIWTSASFTWICSTLQWGSIRSVITTTITGNAEETTINSQQSTMAVEVTDVVLASHSS 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1645g00005 900 CDD GluR_Plant 439 774 - -
Vium1645g00005 900 Gene3D - 31 148 - -
Vium1645g00005 900 Pfam Ligand-gated ion channel 774 807 IPR001320 GO:0015276|GO:0016020
Vium1645g00005 900 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 821 IPR015683 -
Vium1645g00005 900 FunFam Glutamate receptor 153 322 - -
Vium1645g00005 900 Gene3D - 459 535 - -
Vium1645g00005 900 FunFam Glutamate receptor 436 551 - -
Vium1645g00005 900 Pfam Receptor family ligand binding region 51 346 IPR001828 -
Vium1645g00005 900 SMART GluR_14 440 776 IPR001320 GO:0015276|GO:0016020
Vium1645g00005 900 Pfam Bacterial extracellular solute-binding proteins, family 3 464 773 IPR001638 -
Vium1645g00005 900 SUPERFAMILY Periplasmic binding protein-like II 414 772 - -
Vium1645g00005 900 Gene3D - 327 444 - -
Vium1645g00005 900 Gene3D - 536 547 - -
Vium1645g00005 900 Gene3D - 551 691 - -
Vium1645g00005 900 Gene3D - 150 321 - -
Vium1645g00005 900 PIRSF IGluLR_plant 346 841 IPR017103 -
Vium1645g00005 900 PIRSF IGluLR_plant 3 362 IPR017103 -
Vium1645g00005 900 SUPERFAMILY Periplasmic binding protein-like I 35 432 IPR028082 -
Vium1645g00005 900 FunFam Glutamate receptor 552 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1645g00005 Vium-Chr1645 48255 57885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1645g00005 85 814 Ion Channels AT5G11210 32.697 1.12e-117 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1645g00005 - - gmx:100777873 1271.53