Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1644g00002 ATGAAAGAGAATGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGGTGCACGAGGGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTAAGTTCAATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATTTCCTCTCTCCAACAACAAGTTGATGAGCTCCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTCTCACCACCATCATCGGATCAACACCACCACCATCAAGCCTCCCTAATGCCTCATGAACCCTCCAATTCATCATCAGAAAACATGTTCCAATCTAGCAGGGTCTTGTCTTCACAAAGCAAGTCTTTTTTTGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCTTTGTGGTCATACTAG 549 0.4645 MKENGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAEVVHMRMSQFSPPSSDQHHHHQASLMPHEPSNSSSENMFQSSRVLSSQSKSFFGMDMVVDQTIMGQSLWSY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1644g00002 182 Coils Coil 92 112 - -
Vium1644g00002 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 151 - -
Vium1644g00002 182 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vium1644g00002 182 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vium1644g00002 182 MobiDBLite consensus disorder prediction 120 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1644g00002 Vium-Chr1644 30019 34604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1644g00002 1 181 AS2 family AT1G31320 64.088 1.63e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1644g00002 LOB 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1644g00002 - - gmx:100803188 297.36