Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1644g00001 ATGCCCCTCTCTCCCTCTTCCATGGCCTCAATCCCACACTTGTATCCAAACTACACCTTCACTACTCACGATCTTTCCGACTTCCCTACCCCACACATCACTGCCAACGCTTCACTCATGGACAATTCCATGTGGGCTGCTCAAGATAGCTTCATTCCTGTGCTTGATATCAACAATGGTGCACTTGATCATATTGTCTCACTGGATTGTGATACCATGGCTTGTGCCAATTGGATGCCTTCCTTCTCTGACCAAGTTGGGGGGCTCTCGGACTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGCGGCTTTCAGAATTTCAACGCCAGATATCAGCCACATATTGGGGACTTTGGAGAAGAATGTTGTGCTTTTCTCGAGGATGTTAAGCCACCTCCATATCCTAATGCTGCAAGAGAAAACTGGGGACTTCAAGGTAATCAAATACAAGCAGTTGAAGAGCCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTGCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCCGATAGGCGAGTCAGAGTTAGGGGAAGGTTTGCTAGAAACAATGAGCTTTGTGATGAAGACATGACATCAAAAAAACACGAGAATCATCATCACCACAAAGAAGATTTCTACGGTGGTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAAGATTGGCTGCAAGAGGCTATGGCAAGTCTAGTTTATTTATCTCACTCTTCACCAGAGGATATGTAA 810 0.437 MPLSPSSMASIPHLYPNYTFTTHDLSDFPTPHITANASLMDNSMWAAQDSFIPVLDINNGALDHIVSLDCDTMACANWMPSFSDQVGGLSDLAISDCKMGFYGGFQNFNARYQPHIGDFGEECCAFLEDVKPPPYPNAARENWGLQGNQIQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEDMTSKKHENHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1644g00001 269 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 138 224 IPR045281 GO:0009909
Vium1644g00001 269 ProSiteProfiles CCT domain profile. 168 210 IPR010402 GO:0005515
Vium1644g00001 269 Pfam CCT motif 168 210 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1644g00001 Vium-Chr1644 10457 12689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1644g00001 164 218 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 1.67e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1644g00001 CCT 8.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1644g00001 - - vra:106761508 542.347