Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1641g00005 ATCGCGCTGGACACAAAACGCGTCACCCACCGTGATTTAAAGCCGAAGAACCTGCTCCTTGATGAGAACGAAGACCTGAAAGTGTCAGACTTCGGCTTGTCTGCGCTACCTGACCAACGCAGATCTGACGGGATGCTCGTGACGCCGTGCGGCACGCCGGCCTATGTGGCACCGGAGGTTCTGAAAAAGAAGGGCAATGATGGGTCGAAGGCTGATATATGGTCGTGTGGGGTGATCCTCTTCGCGCTTCTTTCTGGGTATTTGCCCTTTCAGTGTGAGAATGTGATGAGGATTTACAGTAAGTCTTTCAAAGCTGATTATGCATTCCCGGAATGGATTTCACCCGAGGCGAGACGCTTGATCTCTAATTTGATGGTTGTAGACCCAGAGAAGAGGTATTACATTCCTGACATCATGAAGGATCCTTGGTTCCAAGTTGGGTTCGTGCGCCCCATTGCGTTTTCCATGAAGGAGACAGTTGTGGAGGATAACATCGACTTCAACGGGGACAATGTCGGTGGCAGTGGAAACGTCAGCAACAATGAAGATGGTAACATCAGCAACAACCATTCTGGAGAACTGGTCGGGTCCAAGCCGGCTCGTCCGTCTTACAATGCTTTCGAGATAATATCCTCGTTGTCACACGGGTTTGATCTGAGTAATTTGTTCGAGACGAGGAAGCGGTTGCCATCGATGTTCATATCGAAGCACTCAGCGTCGTCGGTGATGGCGAAGTTGGAGGCGGTTGCGAAGAACCTAAACTTTAGGGTGACAGGGAAGAAGCAGTTCACGGTAAGAATGCAGGGAGCGACGGAAGGGAGGAAGGGGAAGCTGGGGATGACAATGGAGGTGTTCGAGGTGCGCGACGGTGGTGGAGTTTTCGAAACCAATTTTTAA 897 0.5084 IALDTKRVTHRDLKPKNLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKKGNDGSKADIWSCGVILFALLSGYLPFQCENVMRIYSKSFKADYAFPEWISPEARRLISNLMVVDPEKRYYIPDIMKDPWFQVGFVRPIAFSMKETVVEDNIDFNGDNVGGSGNVSNNEDGNISNNHSGELVGSKPARPSYNAFEIISSLSHGFDLSNLFETRKRLPSMFISKHSASSVMAKLEAVAKNLNFRVTGKKQFTVRMQGATEGRKGKLGMTMEVFEVRDGGGVFETNF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1641g00005 298 Gene3D Transferase(Phosphotransferase) domain 1 2 194 - -
Vium1641g00005 298 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 287 - -
Vium1641g00005 298 CDD CIPK_C 205 287 - -
Vium1641g00005 298 Gene3D Kinase associated domain 1, KA1 200 296 - -
Vium1641g00005 298 SUPERFAMILY Protein kinase-like (PK-like) 3 145 IPR011009 -
Vium1641g00005 298 ProSiteProfiles NAF domain profile. 199 224 IPR018451 GO:0007165
Vium1641g00005 298 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1641g00005 298 SMART serkin_6 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1641g00005 298 FunFam Maternal embryonic leucine zipper kinase 2 182 - -
Vium1641g00005 298 Pfam Protein kinase domain 6 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1641g00005 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 8 20 IPR008271 GO:0004672|GO:0006468
Vium1641g00005 298 Pfam NAF domain 203 258 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1641g00005 Vium-Chr1641 69607 70518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1641g00005 5 287 CBL-interacting serine-threonine protein kinases AT5G10930 55.634 2.20e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium1641g00005 Pkinase 6.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1641g00005 - - vum:124827272 578.941