Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1638g00001 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTCTGCAAAGGACTACCATGACCCTCCTCCAGCACCCTTGATTGATGCTGAGGAACTCACACAGTGGTCCTTCTACAGGGCCTTGATTGCTGAGTTCATTGCCACACTGCTCTTCCTTTACATCACAGTGCTCACTGTTATTGGTTACAAGAGCCAGACTGATGTAACGGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACTTTTGGACTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGTTTGGGCGCCATATGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGGCTTACTACCACAGGTATGGTGGTGGGGCCAATGAGCTGAATGAAGGGTACAGCACAGGTGTTGGATTGGGTGCAGAGATCATTGGAACCTTCGTTTTGGTGTACACTGTGTTCTCTGCTACAGACCCCAAGAGGAATGCCAGAGATTCTCATGTCCCGGTTTTGGCTCCACTTCCAATTGGTTTTGCTGTGTTCATGGTCCACTTGGCAACCATCCCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATATACAACGAAGAGAAGGCCTGGGATGACCATTGGATATTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATTTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACCATTTGA 858 0.4953 MAKHDVEGGSFSAKDYHDPPPAPLIDAEELTQWSFYRALIAEFIATLLFLYITVLTVIGYKSQTDVTAGGDLCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYHRYGGGANELNEGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEEKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1638g00001 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Vium1638g00001 285 Gene3D Glycerol uptake facilitator protein. 22 285 IPR023271 -
Vium1638g00001 285 FunFam Probable aquaporin PIP1-2 22 283 - -
Vium1638g00001 285 CDD MIP 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 279 IPR034294 -
Vium1638g00001 285 Pfam Major intrinsic protein 29 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 NCBIfam MIP family channel protein 41 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium1638g00001 285 SUPERFAMILY Aquaporin-like 29 269 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1638g00001 Vium-Chr1638 29860 32932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1638g00001 1 281 Major Intrinsic Protein MIP AT2G37170 84.752 9.81e-178 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1638g00001 K09872 - gmx:547857 560.836