Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1637g00018 ATGGAAATGGAGTCTGGTCCTCCTCCCAACGATCTCTGTTCAATCTGCCATGCCAACTTTCACATTCCTTGCCAAGCCAATTGCTCTCACTGGTTTTGTGCAAATTGCATCATGCTCGTGTGGCAGCACGCATCAGGAACAAGTTCTTGCAAATGCCCTCTCTGTCGCCGACCCATCACTCTCTTAATCCCCACCGAACACTCTCTCAGCCAGCGTCATGACCCTGAAGTTGCTCAGATTCTCTCCAAAATTCATGCTTATAACCGTGTCTTCGGTGGCCAACCCTCCTCTTTTTTTCAGAGAGTGCAAGATCTTCCTTTTCTGTTGCACAGGCTGCTTCGGGAGTTCCTAAACCCTCAAAGATCCCTTCCTCTTGTCATCCGCGCCCGTGTCTTTGTTGCTATGATTGCAAGTGTTGTATACATCCTGAGCCCAATTGACCTCATTCCTGAAGCTATATTAGGAATAGTTGGTCTCTTAGATGATGTCTTAATTGGGCTCATCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTTCTTTACCTCCGTCATGCCGGTTCCTGA 567 0.4762 MEMESGPPPNDLCSICHANFHIPCQANCSHWFCANCIMLVWQHASGTSSCKCPLCRRPITLLIPTEHSLSQRHDPEVAQILSKIHAYNRVFGGQPSSFFQRVQDLPFLLHRLLREFLNPQRSLPLVIRARVFVAMIASVVYILSPIDLIPEAILGIVGLLDDVLIGLICFLHVAALYRSVLYLRHAGS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1637g00018 188 Pfam Protein of unknown function (DUF1232) 133 165 IPR010652 -
Vium1637g00018 188 SUPERFAMILY RING/U-box 9 64 - -
Vium1637g00018 188 PANTHER UNCHARACTERIZED 4 185 IPR038896 GO:0061630
Vium1637g00018 188 SMART ring_2 13 55 IPR001841 -
Vium1637g00018 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Vium1637g00018 188 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Vium1637g00018 188 CDD RING-HC_RNF113A_B 7 64 - -
Vium1637g00018 188 ProSiteProfiles Zinc finger RING-type profile. 13 56 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1637g00018 38 188 C3H Transcription Factor Family AT1G72175 67.550 8.06e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1637g00018 K15707 - gmx:100306204 323.939