Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1637g00012 ATGTTTCAAAATATGTTTCCGTTGGCTACAAACCAGTTGCAGCCGTTCAGTGCTCTCCCAGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTTCCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAAGTTATGGCTAAGATTGGGGGAAACACTGCTGGCCCAGGTGATGCTGTGGTTAATGTTTACATTAATCATGACAAGAAGTTCGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCCTTAGCTGCTACTCTAGGCCCAAGCCAGCCTAACCCAAACCTTAATCTTGGTGCTGTTGGCTTAACACCAGGGTCTGCTGGTGGACTTGATGGTCCAGATCGAATTTTTGTTGGTGGACTTCCTTATTACTTCACAGAAACGCAGATAAGAGAGCTTTTAGAGACTTTTGGTCCTCTAAGGGGTTTTGATCTAGTGAAAGATAGAGAAACGGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAGGATCTTGCAGTTACTGATATTGCATGTGCTGCTCTAAATGGAATAAAAATGGGAGATAAGACTCTCACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAACCTGAACAGGAGAGCATCTTAATGCATGCCCAACAGCAGATTGCACTGCAGAAACTTATGTTGCAGCCAGCTTTAGTGGCAACAAAGGTGGTGTGCTTAACTCACGCAGTTTCTGCTGACGAGCTCAAAGATGATGAAGACTACGAAGAGATTCTTGATGATATGAGACAAGAGTGCTCCAAATTTGGTTCCTTGGTGAATGTGGTGATCCCGCGTCCACCGCATGATGGTGAGCCTGCCGCCGGAGTTGGGAAGGTGTTTTTGGAGTATGTTGACGTGGATGGTGCCACAAAAGCCCGTGCTGGATTGAATGGACGAAAATTTGATGGGAACCAAGTAGTAGCGGTTTTCTACCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1119 0.4576 MFQNMFPLATNQLQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1637g00012 372 FunFam U2 snRNP auxiliary factor large subunit 266 371 - -
Vium1637g00012 372 CDD RRM2_U2AF65 156 232 - -
Vium1637g00012 372 SMART rrm1_1 278 359 IPR000504 GO:0003723
Vium1637g00012 372 SMART rrm1_1 157 230 IPR000504 GO:0003723
Vium1637g00012 372 SMART rrm1_1 37 115 IPR000504 GO:0003723
Vium1637g00012 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
Vium1637g00012 372 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Vium1637g00012 372 SUPERFAMILY RNA-binding domain, RBD 153 241 IPR035979 GO:0003676
Vium1637g00012 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Vium1637g00012 372 FunFam U2 snRNP auxiliary factor large subunit 31 132 - -
Vium1637g00012 372 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 370 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vium1637g00012 372 PANTHER RNA-BINDING PROTEIN 1 370 - -
Vium1637g00012 372 FunFam U2 snRNP auxiliary factor large subunit 133 248 - -
Vium1637g00012 372 Gene3D - 31 132 IPR012677 -
Vium1637g00012 372 CDD RRM3_U2AF65 270 358 - -
Vium1637g00012 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 363 IPR000504 GO:0003723
Vium1637g00012 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Vium1637g00012 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 355 IPR000504 GO:0003723
Vium1637g00012 372 Gene3D - 147 248 IPR012677 -
Vium1637g00012 372 SUPERFAMILY RNA-binding domain, RBD 267 365 IPR035979 GO:0003676
Vium1637g00012 372 CDD RRM1_U2AF65 35 117 - -
Vium1637g00012 372 Gene3D - 266 371 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1637g00012 Vium-Chr1637 18490 21237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1637g00012 158 348 Eukaryotic Initiation Factors Gene Family AT1G22760 23.958 3.67e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1637g00012 K12837 - gmx:100793801 734.561