Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1637g00011 ATGTTTCAAAATATGTTTCCGTTGGCTACAAACCAGCCGTTCAGTGCTCTCCCAGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTTCCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAAGTTATGGCTAAGATTGGGGGAAACACTGCTGGCCCAGGTGATGCTGTGGTTAATGTTTACATTAATCATGACAAGAAGTTCGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCCTTAGCTGCTACTCTAGGCCCAAGCCAGCCTAACCCAAACCTTAATCTTGGTGCTGTTGGCTTAACACCAGGGTCTGCTGGTGGACTTGATGGTCCAGATCGAATTTTTGTTGGTGGACTTCCTTATTACTTCACAGAAACGCAGATAAGAGAGCTTTTAGAGACTTTTGGTCCTCTAAGGGGTTTTGATCTAGTGAAAGATAGAGAAACGGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAGGATCTTGCAGTTACTGATATTGCATGTGCTGCTCTAAATGGAATAAAAATGGGAGATAAGACTCTCACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAACCTGAACAGGAGAGCATCTTAATGCATGCCCAACAGCAGATTGCACTGCAGAAACTTATGTTGCAGCCAGCTTTAGTGGCAACAAAGGTGGTGTGCTTAACTCACGCAGTTTCTGCTGACGAGCTCAAAGATGATGAAGACTACGAAGAGATTCTTGATGATATGAGACAAGAGTGCTCCAAATTTGGTTCCTTGGTGAATGTGGTGATCCCGCGTCCACCGCATGATGGTGAGCCTGCCGCCGGAGTTGGGAAGGTGTTTTTGGAGTATGTTGACGTGGATGGTGCCACAAAAGCCCGTGCTGGATTGAATGGACGAAAATTTGATGGGAACCAAGTAGTAGCGGTTTTCTACCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1113 0.4573 MFQNMFPLATNQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1637g00011 370 CDD RRM3_U2AF65 268 356 - -
Vium1637g00011 370 FunFam U2 snRNP auxiliary factor large subunit 131 246 - -
Vium1637g00011 370 FunFam U2 snRNP auxiliary factor large subunit 29 130 - -
Vium1637g00011 370 FunFam U2 snRNP auxiliary factor large subunit 264 369 - -
Vium1637g00011 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 361 IPR000504 GO:0003723
Vium1637g00011 370 SUPERFAMILY RNA-binding domain, RBD 151 239 IPR035979 GO:0003676
Vium1637g00011 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 225 IPR000504 GO:0003723
Vium1637g00011 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 353 IPR000504 GO:0003723
Vium1637g00011 370 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 368 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vium1637g00011 370 SUPERFAMILY RNA-binding domain, RBD 19 120 IPR035979 GO:0003676
Vium1637g00011 370 CDD RRM1_U2AF65 33 115 - -
Vium1637g00011 370 SMART rrm1_1 35 113 IPR000504 GO:0003723
Vium1637g00011 370 SMART rrm1_1 276 357 IPR000504 GO:0003723
Vium1637g00011 370 SMART rrm1_1 155 228 IPR000504 GO:0003723
Vium1637g00011 370 SUPERFAMILY RNA-binding domain, RBD 265 363 IPR035979 GO:0003676
Vium1637g00011 370 CDD RRM2_U2AF65 154 230 - -
Vium1637g00011 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
Vium1637g00011 370 Gene3D - 145 246 IPR012677 -
Vium1637g00011 370 Gene3D - 264 369 IPR012677 -
Vium1637g00011 370 PANTHER RNA-BINDING PROTEIN 1 368 - -
Vium1637g00011 370 Gene3D - 29 130 IPR012677 -
Vium1637g00011 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1637g00011 Vium-Chr1637 18490 21237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1637g00011 156 346 Eukaryotic Initiation Factors Gene Family AT1G22760 23.958 3.67e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1637g00011 K12837 - gmx:100793801 726.857