Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1637g00010 ATGTCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTATTACCTACTTTGGTCAGATCACTGGTGCAAATCCTGCAATTCCCGGAATGTTTCAAAATATGTTTCCGTTGGCTACAAACCAGTTGCAGCCGTTCAGTGCTCTCCCAGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTTCCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAAGTTATGGCTAAGATTGGGGGAAACACTGCTGGCCCAGGTGATGCTGTGGTTAATGTTTACATTAATCATGACAAGAAGTTCGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCCTTAGCTGCTACTCTAGGCCCAAGCCAGCCTAACCCAAACCTTAATCTTGGTGCTGTTGGCTTAACACCAGGGTCTGCTGGTGGACTTGATGGTCCAGATCGAATTTTTGTTGGTGGACTTCCTTATTACTTCACAGAAACGCAGATAAGAGAGCTTTTAGAGACTTTTGGTCCTCTAAGGGGTTTTGATCTAGTGAAAGATAGAGAAACGGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAGGATCTTGCAGTTACTGATATTGCATGTGCTGCTCTAAATGGAATAAAAATGGGAGATAAGACTCTCACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAACCTGAACAGGAGAGCATCTTAATGCATGCCCAACAGCAGATTGCACTGCAGAAACTTATGTTGCAGCCAGCTTTAGTGGCAACAAAGGTGGTGTGCTTAACTCACGCAGTTTCTGCTGACGAGCTCAAAGATGATGAAGACTACGAAGAGATTCTTGATGATATGAGACAAGAGTGCTCCAAATTTGGTTCCTTGGTGAATGTGGTGATCCCGCGTCCACCGCATGATGGTGAGCCTGCCGCCGGAGTTGGGAAGGTGTTTTTGGAGTATGTTGACGTGGATGGTGCCACAAAAGCCCGTGCTGGATTGAATGGACGAAAATTTGATGGGAACCAAGTAGTAGCGGTTTTCTACCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1230 0.4577 MSTEESMHLFLVGLVRLQLETITYFGQITGANPAIPGMFQNMFPLATNQLQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1637g00010 409 PANTHER RNA-BINDING PROTEIN 30 407 - -
Vium1637g00010 409 Gene3D - 184 285 IPR012677 -
Vium1637g00010 409 FunFam U2 snRNP auxiliary factor large subunit 68 169 - -
Vium1637g00010 409 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 23 407 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vium1637g00010 409 SMART rrm1_1 194 267 IPR000504 GO:0003723
Vium1637g00010 409 SMART rrm1_1 74 152 IPR000504 GO:0003723
Vium1637g00010 409 SMART rrm1_1 315 396 IPR000504 GO:0003723
Vium1637g00010 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Vium1637g00010 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 332 392 IPR000504 GO:0003723
Vium1637g00010 409 SUPERFAMILY RNA-binding domain, RBD 57 159 IPR035979 GO:0003676
Vium1637g00010 409 Gene3D - 303 408 IPR012677 -
Vium1637g00010 409 SUPERFAMILY RNA-binding domain, RBD 304 402 IPR035979 GO:0003676
Vium1637g00010 409 Gene3D - 68 169 IPR012677 -
Vium1637g00010 409 CDD RRM3_U2AF65 307 395 - -
Vium1637g00010 409 CDD RRM2_U2AF65 193 269 - -
Vium1637g00010 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 400 IPR000504 GO:0003723
Vium1637g00010 409 FunFam U2 snRNP auxiliary factor large subunit 170 285 - -
Vium1637g00010 409 CDD RRM1_U2AF65 72 154 - -
Vium1637g00010 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 156 IPR000504 GO:0003723
Vium1637g00010 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Vium1637g00010 409 SUPERFAMILY RNA-binding domain, RBD 190 278 IPR035979 GO:0003676
Vium1637g00010 409 FunFam U2 snRNP auxiliary factor large subunit 303 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1637g00010 Vium-Chr1637 18490 21568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1637g00010 195 385 Eukaryotic Initiation Factors Gene Family AT1G22760 23.958 3.48e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1637g00010 K12837 - gmx:100793801 757.673