Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1637g00009 ATGTCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACTATTACCTACTTTGGTCAGATCACTGGTGCAAATCCTGCAATTCCCGGAATGTTTCAAAATATGTTTCCGTTGGCTACAAACCAGCCGTTCAGTGCTCTCCCAGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGGGGCCTTCCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAAGTTATGGCTAAGATTGGGGGAAACACTGCTGGCCCAGGTGATGCTGTGGTTAATGTTTACATTAATCATGACAAGAAGTTCGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCCTTAGCTGCTACTCTAGGCCCAAGCCAGCCTAACCCAAACCTTAATCTTGGTGCTGTTGGCTTAACACCAGGGTCTGCTGGTGGACTTGATGGTCCAGATCGAATTTTTGTTGGTGGACTTCCTTATTACTTCACAGAAACGCAGATAAGAGAGCTTTTAGAGACTTTTGGTCCTCTAAGGGGTTTTGATCTAGTGAAAGATAGAGAAACGGGAAATTCAAAGGGTTATGCATTTTGTGTTTACCAGGATCTTGCAGTTACTGATATTGCATGTGCTGCTCTAAATGGAATAAAAATGGGAGATAAGACTCTCACAGTTAGACGAGCTAATCAAGGTGCAAACCCACAGCAGCCTAAACCTGAACAGGAGAGCATCTTAATGCATGCCCAACAGCAGATTGCACTGCAGAAACTTATGTTGCAGCCAGCTTTAGTGGCAACAAAGGTGGTGTGCTTAACTCACGCAGTTTCTGCTGACGAGCTCAAAGATGATGAAGACTACGAAGAGATTCTTGATGATATGAGACAAGAGTGCTCCAAATTTGGTTCCTTGGTGAATGTGGTGATCCCGCGTCCACCGCATGATGGTGAGCCTGCCGCCGGAGTTGGGAAGGTGTTTTTGGAGTATGTTGACGTGGATGGTGCCACAAAAGCCCGTGCTGGATTGAATGGACGAAAATTTGATGGGAACCAAGTAGTAGCGGTTTTCTACCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1224 0.4575 MSTEESMHLFLVGLVRLQLETITYFGQITGANPAIPGMFQNMFPLATNQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPPHDGEPAAGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1637g00009 407 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 23 405 IPR006529 GO:0003723|GO:0005634|GO:0006397
Vium1637g00009 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 154 IPR000504 GO:0003723
Vium1637g00009 407 Gene3D - 182 283 IPR012677 -
Vium1637g00009 407 Gene3D - 66 167 IPR012677 -
Vium1637g00009 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Vium1637g00009 407 FunFam U2 snRNP auxiliary factor large subunit 66 167 - -
Vium1637g00009 407 SUPERFAMILY RNA-binding domain, RBD 302 400 IPR035979 GO:0003676
Vium1637g00009 407 CDD RRM1_U2AF65 70 152 - -
Vium1637g00009 407 Gene3D - 301 406 IPR012677 -
Vium1637g00009 407 FunFam U2 snRNP auxiliary factor large subunit 301 406 - -
Vium1637g00009 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 398 IPR000504 GO:0003723
Vium1637g00009 407 SMART rrm1_1 192 265 IPR000504 GO:0003723
Vium1637g00009 407 SMART rrm1_1 313 394 IPR000504 GO:0003723
Vium1637g00009 407 SMART rrm1_1 72 150 IPR000504 GO:0003723
Vium1637g00009 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Vium1637g00009 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 390 IPR000504 GO:0003723
Vium1637g00009 407 SUPERFAMILY RNA-binding domain, RBD 55 157 IPR035979 GO:0003676
Vium1637g00009 407 CDD RRM2_U2AF65 191 267 - -
Vium1637g00009 407 CDD RRM3_U2AF65 305 393 - -
Vium1637g00009 407 SUPERFAMILY RNA-binding domain, RBD 188 276 IPR035979 GO:0003676
Vium1637g00009 407 PANTHER RNA-BINDING PROTEIN 30 405 - -
Vium1637g00009 407 FunFam U2 snRNP auxiliary factor large subunit 168 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1637g00009 Vium-Chr1637 18490 21570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1637g00009 193 383 Eukaryotic Initiation Factors Gene Family AT1G22760 23.958 3.86e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1637g00009 K12837 - gmx:100793801 749.969