Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1635g00004 ATGCCTGGAAGCTTAAGGAATCTCTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTTTCATTAAACTCCCTTCTCTTTTTTCCATGTTGTTGTTACTCCCTTGATGAGCAAGGTCAGACTCTTATAGCATGGAAAAACAATTTGAACATCACTTCCGATGTGTTACCATCATGGAACCCTTCAGCCTCAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGAAGTTGTAGAGATAAACCTCAAATCAGTCAACTTGCAAGGCTCATTGCCTTCAAATTTTCAACCTCTAAGGTCCTTGAAGTTTCTAATACTCTCATCAACCAACCTCACTGGAAGGATTCCAAAAGAGATTGGAGACTATCTAGAGCTCACCTTTGTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATTCCAGAAGAAATTTGCAGCCTGAGAAAACTTATGAGTTTGTCTCTCCATACAAACTTCCTTGAAGGCAGCATTCCATCCAATATTGGCAATTTATCAAGCCTTGTGAACTTGACAATCTATGATAATCATCTCAGTGGTGAAATTCCAAAGAGCATTGGCTCTTTAAGCAAGCTCCAAGTTTTCAGAGCCGGTGGCAATAAGAACCTCAAGGGTGAGATCCCATGGGAGATTGGAAACTGCACCAACTTGGTCGTGCTAGGCCTTGCAGAAACCAGCATTTCTGGAAGTCTTCCTTCTTCAATCAAAATGCTGAAAAAAGTCAAAACCATAGCCATATACACAACTCTATTGTCAGGTTCTATTCCAGAAGAGATTGGCAATTGCAGTGAGTTGCAGAACCTGTACTTACATCAGAACTCTATCTCTGGCTCGATACCAAGCCAAATTGGAGAACTCAACCAGCTTAAGAGTCTACTTTTGTGGCAAAACAATATAGTTGGTACCATCCCAGAAGAGCTTGGAAGCTGCACAGAGATCAAAGTCATAGACTTATCTGAAAACCTTCTTACTGGTAGCATACCAAGAAGTTTTGGCAACCTTTTAAATCTCCAAGAGCTTCAGCTAAGTGTCAATCAGCTCTCTGGTATAATCCCTCCAGAGATTTCAAATTGCACTTCTCTGAATCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGAAACTTGAAAGGCTTGACTCTTTTCTTTGCATGGAAGAACAAGCTAACAGGAAACATTCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCACTTGATCTTTCTTACAACAACTTGATTGGTCCTGTTCCCAGACAACTATTTGGGTTGAGGAACCTCACCAAAATTCTGCTTCTTTCCAATGAGTTATCAGGCTTTATACCACCTGATATAGGAAATTGCACAAGCCTCTACAGGCTGAGGTTGAATCACAACAGACTAGCAGGTAACATTCCTCCAGAGATTGGCAACTTGAAGAGTTTGAATTTTATGGACATGAGCAACAATCATCTCACTGGAGAGATTCCTCCAACACTATCTGGATGCCAGAATCTTGAGTTTCTAGACCTTCATTCCAACAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCCAAAAGCCTTGAGTTGATTGACTTGTCAGATAACAGGCTAAGTGGTCCGTTGAGTCACACCATTGGTTCATTGGTTGAATTAACCAAACTCAACCTTGGAAAGAATCAGATAAGTGGAAGAATCCCAGCAGAGATCTTGTCCTGTACTAAGCTACAACTTCTGGACTTGGGAAGCAATAGCTTAGATGGAGAAATTCCCAATGAAGTTGGTTTAATTCCTTCATTGGAAATCTCACTCAACCTTAGCTTCAATCAGTTTTCTGGTAAAATTCCATCTCAGTTCTCCGGTCTTACCAAACTAGGAGTGCTTGATCTGTCTCACAACAAGCTCTCAGGGAATTTAGATGCCCTCTCTGACCTTGAGAATCTCGTCTCCTTAAACGTTTCCTTCAATGGCTTCTCTGGTGAGTTGCCTAACACTCGATTCTTCCACAAACTCCCTCTTAGTGATCTTGCTGAAAATCATGGTCTCTACATTGCCGGAGGTGTTGTAACTCCTGCTGACAAAGTCCATGCTTCATCGACCATGAAGTTCATCATGTCCATTCTCTTAAGCACCAGTGCAGTTCTAGTGCTGCTTACAATATATGTCTTGGTCCGTACTCACATTGCCAGCAAGGTTCTCATGGAAAATGAAGCTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTCAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCTGGGGTGGTGTACAAGGTGACAATTCCAAATGGTGAAACACTGGCAGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACATTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTGGGTTGGGGATCAAACAAGAACCTGAAGCTTCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGTTCATTGCTTCATGGTTCAGGAAAGGGAAAAGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCACATGCACTAGCATATTTGCACCATGACTGTTTGCCTGCCATTATCCATGGAGATGTCAAAGGCATGAATGTGTTATTAGGCCCTGGATATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAACTGCAACTGAAATTGGTGACAATACTAACTCCAAGCCACTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGGTCCTGAGCATGCATCTCTTCAGCCTATCACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCAGTGGAAGGCACCCATTAGACCCAACTCTGCCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGGCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAATTTGAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTACAAACTCTAGCAGTGTCATTTCTATGTGTAAGCACTAGATCTGAAGAACGTCCAACAATGAAGGATGTTGTTGCAATGCTGAAGGAAATTAGACCCCTTGAGACCTCAAGAACGGACCGTGATGTATTGAAGGGAGGTTTAACTTCACACAGTTCTCCACCACCTCCTAAGAATGTGGTTTCACAAGGATCTTCTACATGCTCTTATAATTTCTCAGATAACTCAATCAGTTGA 3276 0.4243 MPGSLRNLSLSPKIFSFTLLLSLNSLLFFPCCCYSLDEQGQTLIAWKNNLNITSDVLPSWNPSASSPCNWFGVYCNSQGEVVEINLKSVNLQGSLPSNFQPLRSLKFLILSSTNLTGRIPKEIGDYLELTFVDLSGNSLFGEIPEEICSLRKLMSLSLHTNFLEGSIPSNIGNLSSLVNLTIYDNHLSGEIPKSIGSLSKLQVFRAGGNKNLKGEIPWEIGNCTNLVVLGLAETSISGSLPSSIKMLKKVKTIAIYTTLLSGSIPEEIGNCSELQNLYLHQNSISGSIPSQIGELNQLKSLLLWQNNIVGTIPEELGSCTEIKVIDLSENLLTGSIPRSFGNLLNLQELQLSVNQLSGIIPPEISNCTSLNQLELDNNALSGEIPDLIGNLKGLTLFFAWKNKLTGNIPDSLSECQELEALDLSYNNLIGPVPRQLFGLRNLTKILLLSNELSGFIPPDIGNCTSLYRLRLNHNRLAGNIPPEIGNLKSLNFMDMSNNHLTGEIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLELIDLSDNRLSGPLSHTIGSLVELTKLNLGKNQISGRIPAEILSCTKLQLLDLGSNSLDGEIPNEVGLIPSLEISLNLSFNQFSGKIPSQFSGLTKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGFSGELPNTRFFHKLPLSDLAENHGLYIAGGVVTPADKVHASSTMKFIMSILLSTSAVLVLLTIYVLVRTHIASKVLMENEAWEMTLYQKLDFSIDDIVFNLTSANVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKGMNVLLGPGYQPYLADFGLARTATEIGDNTNSKPLQRHYLAGSYGYMGPEHASLQPITEKSDVYSFGMVLLEVLSGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDTNLRGRADPTMHEMLQTLAVSFLCVSTRSEERPTMKDVVAMLKEIRPLETSRTDRDVLKGGLTSHSSPPPPKNVVSQGSSTCSYNFSDNSIS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1635g00004 1091 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 195 285 - -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 336 433 IPR032675 -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 434 532 IPR032675 -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 611 694 IPR032675 -
Vium1635g00004 1091 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Vium1635g00004 1091 Pfam Leucine rich repeat 611 665 IPR001611 GO:0005515
Vium1635g00004 1091 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Vium1635g00004 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 840 1058 - -
Vium1635g00004 1091 MobiDBLite consensus disorder prediction 1065 1091 - -
Vium1635g00004 1091 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 735 839 - -
Vium1635g00004 1091 Gene3D Phosphorylase Kinase; domain 1 732 839 - -
Vium1635g00004 1091 Pfam Protein kinase domain 769 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1635g00004 1091 SUPERFAMILY RNI-like 83 381 - -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 533 610 IPR032675 -
Vium1635g00004 1091 Gene3D Ribonuclease Inhibitor 197 335 IPR032675 -
Vium1635g00004 1091 SMART serkin_6 766 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1635g00004 1091 FunFam Leucine-rich receptor-like protein kinase family protein 338 610 - -
Vium1635g00004 1091 PRINTS Leucine-rich repeat signature 630 643 - -
Vium1635g00004 1091 PRINTS Leucine-rich repeat signature 536 549 - -
Vium1635g00004 1091 Gene3D Transferase(Phosphotransferase) domain 1 840 1059 - -
Vium1635g00004 1091 ProSitePatterns Protein kinases ATP-binding region signature. 772 795 IPR017441 GO:0005524
Vium1635g00004 1091 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 307 1041 - -
Vium1635g00004 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Vium1635g00004 1091 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vium1635g00004 1091 SUPERFAMILY Protein kinase-like (PK-like) 764 1041 IPR011009 -
Vium1635g00004 1091 FunFam Leucine-rich receptor-like protein kinase family protein 36 194 - -
Vium1635g00004 1091 FunFam Putative LRR receptor-like serine/threonine-protein kinase 611 696 - -
Vium1635g00004 1091 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Vium1635g00004 1091 SUPERFAMILY RNI-like 288 657 - -
Vium1635g00004 1091 ProSiteProfiles Protein kinase domain profile. 766 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1635g00004 1091 MobiDBLite consensus disorder prediction 1050 1091 - -
Vium1635g00004 1091 SMART LRR_typ_2 102 126 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 343 367 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 439 463 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 150 174 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 557 581 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 630 653 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 295 319 IPR003591 -
Vium1635g00004 1091 SMART LRR_typ_2 487 511 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1635g00004 Vium-Chr1635 22337 26375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1635g00004 33 1090 Receptor kinase-like Gene Family AT5G56040 67.166 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium1635g00004 Pkinase 3.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1635g00004 - - gmx:100802880 1993.78