Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1635g00002 ATGTCAACTAAAATTGCACTGCTATTGAGAGTAATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCATCTTTGCTTGTTTCTCAAGGCACTCAGCTTGGACTTTTTTTAAAGAAAATTTTGAAAGGTGACATGGGTTGTCTCTCAAAGAGAGAGTTCATAGAAACCATCTCACTATATCTTAACCAAAGAAGTAGCTTGGCATCAAATGACTTCTCCAAATTCTGCAATTGTGGTGGAAAACGTGATAGTATTCGACAAAATGCCAATTATTCTGCAAAGTATGCTGAAGTAATCAATACTCAACAGAAACAACTCGAGGGTATGAAGTACTTTTTTAAAGAAACAAAATTGGAAGTCAAAAAAATTCAATCAGAGTGGGAAGAAGAATTGAGTAGGCTGGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCACTTCCTACCACAAAGTTTTGGAGGAGAACCGCCTTCTTTACAATGAAGTACAAGACCTTAAAGGAGCCATCAGGGTGTATTGTAGAGTGAGGCCATTCTTACCAGGACAATCAAACGGGCAGTCTACGGTGGACTATATTGGAGAAAATGGAGATATGATGATCATAAATCCCCTTAAGCATGGAAAAGATGCTAGACGAGTATTTTCATTTGATAAGGTTTTTGGAACAACTGTAACACAAGAACAAATTTATGCTGACACTCAGCCCTTGATCAGATCCGTTCTAGATGGTTATAATGTATGCATCTTTGCATACGGGCAGACTGGCTCCGGGAAAACATACACAATGAGTGGCCCTGATCTTACAACAGAAGAGACATGGGGTGTAAACTACAGGGCTTTGGGTGATTTATTTCATATATCAAAGGAAAGGTCTGATTCCATAAAATATGAAGTTTTCGTTCAGATGATTGAAATATATAATGAACAAGTGAGAGATTTGCTAGTCAGTGATGGCTCTAACAGAAGATTAGACATACGAAACAATTCTCAAATGAATGGCATCAATGTGCCTGATGCATTTTTGGTTCCGGTTACCTGTACTCGAGATGTTCTAGACTTGATGAGAATTGGTCAGAAGAACCGAGCCGTGGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCCCATAGTGTTTTGACTGTTCATGTTAGAGGAAGGGAGTTAGTTTCCAACTCCATTCTAAGAGGTTGTCTCCATCTTGTGGATTTGGCTGGAAGTGAGAGGGTTGACAAATCTGAGGCAGTGGGTGAGAGACTAAAGGAAGCGCAACATATAAATAGATCACTTTCTGCACTTGGGGATGTTATCTCTGCCTTGGCACAGAAGAGTCCACATATCCCTTATAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCTGAACTTAATGCTTTTGGGGAGACAATTAGCACACTCAAATTTGCTGAGAGGGTTTCATCCATTGAACTTGGGGCTGCTCAATCTAACAAAGAAACTGGTGAAATCCGAGAACTAAAGGAAGAGATATCAAATCTCAAATTGGCATTGGAGAGGAAGGAAGCAGAACTGGATCAGTGGAAGGCTGGGAATGCTAGAAACGTCATTGATTCTCAAAAACCAAGAGCTGTTTCACCTTTTCAATTACCAAAATATGGTACCAGTGGCAACATGAAGCATGAAACTGGTCAAAGACTTATGGATGATAGAAGCTTGGAGTCTAGAAGTTGCTCTTCAGGTAAGCAAAGAAGGTCAAGGTTTCCCTCAACACTAATGGAGAAGGATTCTATGCCAAAAATGTCTTTTCCTACTGAAGAAAAGTTAGTCAGCTCAGTGAAGGGAAGATCACCATCTCCTCCAGTGAGAAGATCACAATCCAATGATAGAGGGACAGTCATTAAAAGCAAAGTAAAAACTGAAACAATGGACAACCAACCAATATTAAAGCATCCATTTCCAGCTGCTAACAAATCCCTTGTTACAATGCCAGTGGTTGCATCCACTGACACAAGAATTTATGTGAATTCACAAGAGACTGTAAAGCATGAAAACATTTCAGAAACAATCTTCAACCTCCAGAAGTTCAACTATAAGAAAGTTCATCAAGAACATGAAGAGGAACAATTCAAGCAAGCACTTAGTGCAGTAAGACAAGGTGGCATCAGAAAAAGCAAGGTTGAGAGTAAGGCTAAGCCCAAGCATAATCAACTATCACCCTTCAAGATTCAAAAGCCTGATTTGACCTCATCATTCATTCCTGACATGGAATATGCTGGTGAAAGTAATGTGGAGTCACCTCCAAAGAATGATTACTCCGAGGCTGAAAATGATCTTAGATTTATGGAGTCTGCTGTCCATGGTGCTTTAAGTCTCAAAAAGTTACGTCAGAACTTTGCCAGGAATTTTCAGAACCCTGAATCAAGGTATTACTAA 2457 0.3964 MSTKIALLLRVIDTLLSKVVKDFSSLLVSQGTQLGLFLKKILKGDMGCLSKREFIETISLYLNQRSSLASNDFSKFCNCGGKRDSIRQNANYSAKYAEVINTQQKQLEGMKYFFKETKLEVKKIQSEWEEELSRLEDHIKSLEVASTSYHKVLEENRLLYNEVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIINPLKHGKDARRVFSFDKVFGTTVTQEQIYADTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALGDLFHISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRLDIRNNSQMNGINVPDAFLVPVTCTRDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAFGETISTLKFAERVSSIELGAAQSNKETGEIRELKEEISNLKLALERKEAELDQWKAGNARNVIDSQKPRAVSPFQLPKYGTSGNMKHETGQRLMDDRSLESRSCSSGKQRRSRFPSTLMEKDSMPKMSFPTEEKLVSSVKGRSPSPPVRRSQSNDRGTVIKSKVKTETMDNQPILKHPFPAANKSLVTMPVVASTDTRIYVNSQETVKHENISETIFNLQKFNYKKVHQEHEEEQFKQALSAVRQGGIRKSKVESKAKPKHNQLSPFKIQKPDLTSSFIPDMEYAGESNVESPPKNDYSEAENDLRFMESAVHGALSLKKLRQNFARNFQNPESRYY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1635g00002 818 CDD KISc_C_terminal 167 499 - -
Vium1635g00002 818 MobiDBLite consensus disorder prediction 554 638 - -
Vium1635g00002 818 Coils Coil 125 145 - -
Vium1635g00002 818 Gene3D Kinesin motor domain 111 499 IPR036961 -
Vium1635g00002 818 SMART kinesin_4 167 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 MobiDBLite consensus disorder prediction 570 588 - -
Vium1635g00002 818 ProSiteProfiles Kinesin motor domain profile. 169 497 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 Coils Coil 504 538 - -
Vium1635g00002 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 535 IPR027417 -
Vium1635g00002 818 PRINTS Kinesin heavy chain signature 244 265 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 PRINTS Kinesin heavy chain signature 447 468 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 PRINTS Kinesin heavy chain signature 398 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 PRINTS Kinesin heavy chain signature 367 384 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 PANTHER KINESIN-LIKE PROTEIN KLP-3 50 685 IPR027640 GO:0003777|GO:0007018
Vium1635g00002 818 Pfam Kinesin motor domain 175 497 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00002 818 FunFam kinesin-like protein KIN-14F 164 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1635g00002 Vium-Chr1635 3057 8649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1635g00002 160 497 Calmodulin-binding Proteins AT5G65930 43.023 9.97e-77 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1635g00002 K10406 - gmx:100786466 1428.69