Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1635g00001 ATGAAGTACTTTTTTAAAGAAACAAAATTGGAAGTCAAAAAAATTCAATCAGAGTGGGAAGAAGAATTGAGTAGGCTGGAGGATCATATCAAAAGCCTTGAAGTGGCCTCCACTTCCTACCACAAAGTTTTGGAGGAGAACCGCCTTCTTTACAATGAAGTACAAGACCTTAAAGGAGCCATCAGGGTGTATTGTAGAGTGAGGCCATTCTTACCAGGACAATCAAACGGGCAGTCTACGGTGGACTATATTGGAGAAAATGGAGATATGATGATCATAAATCCCCTTAAGCATGGAAAAGATGCTAGACGAGTATTTTCATTTGATAAGGTTTTTGGAACAACTGTAACACAAGAACAAATTTATGCTGACACTCAGCCCTTGATCAGATCCGTTCTAGATGGTTATAATGTATGCATCTTTGCATACGGGCAGACTGGCTCCGGGAAAACATACACAATGAGTGGCCCTGATCTTACAACAGAAGAGACATGGGGTGTAAACTACAGGGCTTTGGGTGATTTATTTCATATATCAAAGGAAAGGTCTGATTCCATAAAATATGAAGTTTTCGTTCAGATGATTGAAATATATAATGAACAAGTGAGAGATTTGCTAGTCAGTGATGGCTCTAACAGAAGATATCCTTTAAGCAGTGCTCTATCNTTTTAA 672 0.3869 MKYFFKETKLEVKKIQSEWEEELSRLEDHIKSLEVASTSYHKVLEENRLLYNEVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIINPLKHGKDARRVFSFDKVFGTTVTQEQIYADTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALGDLFHISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRYPLSSALSF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1635g00001 223 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 2 215 - -
Vium1635g00001 223 Gene3D Kinesin motor domain 3 220 IPR036961 -
Vium1635g00001 223 ProSiteProfiles Kinesin motor domain profile. 60 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00001 223 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 216 IPR027640 GO:0003777|GO:0007018
Vium1635g00001 223 Pfam Microtubule binding 46 206 IPR031852 GO:0008017
Vium1635g00001 223 Coils Coil 16 36 - -
Vium1635g00001 223 SMART kinesin_4 58 222 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1635g00001 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1635g00001 Vium-Chr1635 168 3034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1635g00001 51 213 Calmodulin-binding Proteins AT5G65930 39.286 2.85e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1635g00001 K10406 - vum:124827244 450.284