Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1634g00007 ATGCCTCCGAAATCGACGAAGCGTGGGTCCGCGTCAAGCGCCTCAAAGAGGGGTGGCAGAGGGGGCAGGGGAATCTCCAAGGGTGCGCATAGCCAGCAGCACCATGAAGCTGCGGAAGAGGTAGTGAAGGTCGAGGAGAAGCAACCCATTGTTGTTGCTGAGGAGGAACAACCCAAGGCGATGGAAGAAGAGCACCCTTTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAGGAATCTGTTGTGGTGGTTGAGGACAAGGCTATTGATATGAATCAAATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATCTTGCTAATGGATTGACCGCCGTGAAAAACAATGAAGAGGATGTTAAGGAATCCATAGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCCGAGTATGAAGCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGGTCATGAGGTGGGCAATGAAGTAGAGGAAGAAGAGGCTGAGGATAATTTAGGAGAAGAAGAGGGTGATACAGGTGAGGAAGAGGTTGAAGATGTTCATGACGAACTTGAGGGTGAGGAGGAGCATGAGCATACTGGTGAGGAGCATGAGCACCCTGACTTTGCTGATGTGGATGAAGAGGAACATCGAGAAGTTGTGAAAGAGAGGCGGAAGCGGAAAGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGTGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTTGTTACAGAGGTCAGGTTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCTAAACGAGCTGTGTCAGAGCTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACACTCTATTTGGGGAATATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGCTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACCTTGGTAGAAGATACTAATGATGAAGGAAAGAACCGAGGGTTTGCATTTTTAGAATTTTCTTCTCGTTCTGATGCTATGGATGCCTTTAAGCGGTTGCAGAAGAGGGATGTAGTATTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTACCTCCTTCATGGGATGAAGATTATGTTCGTGATCTTCTCAAGAAATATGGAGAGATTGAAAAGATTGAGCTAGCCAGGAACATGCCAGCTGCACGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACATGATGCTGCTGTAAAATGTGCTGATAGTATTACTGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCAAGGTTGTCAAGACCACTTCAGAGAGGTCGTGGAAAACATATTAGTCGTGGTGACTATCGTTCTGGTCGAGGATCTGGAATGATGACGAGGCCTTCATGGAGCCGACCTGCTCCTCGTACTTTTACTCGTGGTGCAAGAGGAGTTGGAAGTCGTGCTCCACCTGCCAGACCAGTTAGTGTGAGAGATAGACGCCCTATCATGTCCATACCTGCAAGAAGTAGGCCAGTGCCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGAGAGGATATACCACCTCCAAGAAGTAGAGTTCCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGAAGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGTCCTGGCTACTCTGAGCTCCCTAGAAGCACATCTCGGGCTGCACCGAGGAGGGGTTATGTGGATGAGGGATATAGCCAAAGATTTGAGAGGCCTCCACCTCCACCTCCTCCCCATATAAGCTACCGTGAAGGACGTCCCCGAGATTATGATACTCTGTCTGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCTCGATATGCTGATACTGGTGCCCGCCAATCAAGAGCTCGATTGGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTGGTAGCAGCAGAAGCTCTATGTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGTTCTTTTGCTGGTGGTGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCCCGTGGAAGTGATGTTGGTGGCAGCTCATATTCGTCAGTGTATTCAAGCAGGGGCGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGAGGATCAGGCTCTTATTATTGA 2457 0.4628 MPPKSTKRGSASSASKRGGRGGRGISKGAHSQQHHEAAEEVVKVEEKQPIVVAEEEQPKAMEEEHPLVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTAVKNNEEDVKESIDEYEKDERLDLEDNDPEYEAEEYGGVDYDEKEIEQDEGHEVGNEVEEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTGEEHEHPDFADVDEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVSELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPAPRTFTRGARGVGSRAPPARPVSVRDRRPIMSIPARSRPVPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVPVDYGSRVASERRPSYRDYPARGPGPGYSELPRSTSRAAPRRGYVDEGYSQRFERPPPPPPPHISYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSSRSSMSSQDSHGMYSSRQGMSYGGSFAGGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1634g00007 818 Coils Coil 109 129 - -
Vium1634g00007 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Vium1634g00007 818 MobiDBLite consensus disorder prediction 128 197 - -
Vium1634g00007 818 SUPERFAMILY RNA-binding domain, RBD 236 380 IPR035979 GO:0003676
Vium1634g00007 818 FunFam Heterogeneous nuclear ribonucleoprotein Q 316 398 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 1 48 - -
Vium1634g00007 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Vium1634g00007 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Vium1634g00007 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 383 IPR000504 GO:0003723
Vium1634g00007 818 SUPERFAMILY RNA-binding domain, RBD 407 515 IPR035979 GO:0003676
Vium1634g00007 818 Gene3D - 316 398 IPR012677 -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 734 754 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 494 681 - -
Vium1634g00007 818 Gene3D - 152 315 IPR012677 -
Vium1634g00007 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Vium1634g00007 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Vium1634g00007 818 MobiDBLite consensus disorder prediction 108 223 - -
Vium1634g00007 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 817 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 29 48 - -
Vium1634g00007 818 SMART rrm1_1 316 395 IPR000504 GO:0003723
Vium1634g00007 818 SMART rrm1_1 236 309 IPR000504 GO:0003723
Vium1634g00007 818 SMART rrm1_1 413 488 IPR000504 GO:0003723
Vium1634g00007 818 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 169 315 - -
Vium1634g00007 818 Gene3D - 402 520 IPR012677 -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 785 818 - -
Vium1634g00007 818 CDD RRM_SF 414 488 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 198 223 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 586 600 - -
Vium1634g00007 818 CDD RRM_SF 317 384 - -
Vium1634g00007 818 CDD RRM_SF 237 308 - -
Vium1634g00007 818 FunFam RNA recognition water-stress protein1 402 523 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 731 754 - -
Vium1634g00007 818 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1634g00007 Vium-Chr1634 22541 28223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1634g00007 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 1.73e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1634g00007 - - gmx:100779340 1152.12