Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1630g00003 AACTTGGCTATCAGTTATTCAGAGGTTAGAGAATCTGAAAGTAAGGCTCACTCTCAAGCTGAAATACTAAAAAATGCTTTGGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCTGAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATACGTCTGAGAGGGGTATTTTGGAGCTAACTGAGGCTATTAAAGTTAAAGAAGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGGCAAAACAGGCCTACAACACTCTATTGACCCAGAAACAGGCCTTAGCTAAACAACTTCAACAACTAAATACTTCAATAGAAAATTCAAAAGCGAGGATTGCACATAGTGAAGAACAGATGAAAAGCATTCTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCGGTCACCCTGGAATTTGCAAGGTGGGAATTGGCAGATGCCGAGAAGGAATTGAAGCTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAGTACGATCAAATTCAGAAAGACACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTCAAGGAAGAAGCTAGAGGAAGAATTAAGGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTTGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCTAAGGAGGTTGTGATTGTCAAATGCTATCATTTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTCCGTTTTGTAAAGATATGA 1002 0.4062 NLAISYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDTSERGILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQAYNTLLTQKQALAKQLQQLNTSIENSKARIAHSEEQMKSILSEAIKCNQEEKHLAVTLEFARWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELRELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1630g00003 333 SUPERFAMILY RING/U-box 280 324 - -
Vium1630g00003 333 SUPERFAMILY Tropomyosin 134 281 - -
Vium1630g00003 333 Coils Coil 190 259 - -
Vium1630g00003 333 Coils Coil 36 112 - -
Vium1630g00003 333 PANTHER RING FINGER PROTEIN-RELATED 8 333 IPR013956 GO:0004842|GO:0010390
Vium1630g00003 333 Pfam Zinc finger, C3HC4 type (RING finger) 280 322 - -
Vium1630g00003 333 Gene3D - 193 279 - -
Vium1630g00003 333 Coils Coil 134 175 - -
Vium1630g00003 333 CDD RING-HC_Bre1-like 273 329 - -
Vium1630g00003 333 ProSitePatterns Zinc finger RING-type signature. 296 305 IPR017907 -
Vium1630g00003 333 SMART ring_2 281 319 IPR001841 -
Vium1630g00003 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 331 IPR013083 -
Vium1630g00003 333 ProSiteProfiles Zinc finger RING-type profile. 281 319 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1630g00003 Vium-Chr1630 25252 28203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1630g00003 254 328 RAD5 or RAD16-like Gene Family AT5G05130 26.190 3.34e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1630g00003 K10696 - vum:124827233 571.622