Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1630g00002 ATGTTTTATCTGTCCATGTTCAGGGGTATTTTGGAGCTAACTGAGGCTATTAAAGTTAAAGAAGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGGCAAAACAGGCCTACAACACTCTATTGACCCAGAAACAGGCCTTAGCTAAACAACTTCAACAACTAAATACTTCAATAGAAAATTCAAAAGCGAGGATTGCACATAGTGAAGAACAGATGAAAATCATTCTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCGGTCACCCTGGAATTTGCAAGGTGGGAATTGGCAGATGCCGAGAAGGAATTGAAGCTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAGTACGATCAAATTCAGAAAGACACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTCAAGGAAGAAGCTAGAGGAAGAATTAAGGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTTGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCTAAGGAGGTTGTGATTGTCAAATGCTATCATTTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTCCGTTTTGTAAAGATATGA 819 0.3968 MFYLSMFRGILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQAYNTLLTQKQALAKQLQQLNTSIENSKARIAHSEEQMKIILSEAIKCNQEEKHLAVTLEFARWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELRELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1630g00002 272 Coils Coil 129 198 - -
Vium1630g00002 272 Gene3D - 131 218 - -
Vium1630g00002 272 SUPERFAMILY RING/U-box 219 263 - -
Vium1630g00002 272 Pfam Zinc finger, C3HC4 type (RING finger) 219 261 - -
Vium1630g00002 272 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vium1630g00002 272 ProSiteProfiles Zinc finger RING-type profile. 220 258 IPR001841 -
Vium1630g00002 272 SMART ring_2 220 258 IPR001841 -
Vium1630g00002 272 Coils Coil 10 51 - -
Vium1630g00002 272 Coils Coil 73 107 - -
Vium1630g00002 272 CDD RING-HC_Bre1-like 212 268 - -
Vium1630g00002 272 PANTHER RING FINGER PROTEIN-RELATED 14 272 IPR013956 GO:0004842|GO:0010390
Vium1630g00002 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 270 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1630g00002 Vium-Chr1630 19206 21509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1630g00002 193 267 RAD5 or RAD16-like Gene Family AT5G05130 26.190 2.44e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1630g00002 K10696 - vum:124827232 461.07