Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1629g00004 ATGTTCAATGCAGCTGTTTCTGGAGAAAGATTCGTTGCTGTGGATGTTACATTCAGAAACACTGCAGGCCCTGAGAAGCACCAAGCAGTGGCAGTGAGGAACAATGCAGACCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTCCACTCTCTCAGGCAATTCTACAGGGAATGTGACATTTATGGCACTGTGGATTTCATATTTGGAAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCATTGCCAAAGCAGAAGAATGATGTCACAGCACAAGGAAGAACTGACCCCAATCAAAACACAGGAATTTCACTCCAGAATTGCAGGATTGAGGCTGCACCTGACTTGGCTGCAGACTTGAACTCAATTGAAAATTACTTGGGCAGGCCATGGAAACTGTACTCAAGGACAGTATACTTGCAGTCATATATTGGAGAACTAATTCAATCCGTTGGATGGTTAGAATGGAATGGAACAAATGGATTAGACACCCTCTTTTATGGTGAGTTCAATAACTTTGGACCTGGTTCTGATACAAGCAAGAGGGTACAATGGAATGGTTACAATATACTGAGCCCTACACAAGCTTGGAACTTTACTGTGTACAATTTTACCTTGGGACAAACATGGCTTCCAGATACTGATATACCCTACTCTGAAGGGCTTTAG 702 0.4316 MFNAAVSGERFVAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPKQKNDVTAQGRTDPNQNTGISLQNCRIEAAPDLAADLNSIENYLGRPWKLYSRTVYLQSYIGELIQSVGWLEWNGTNGLDTLFYGEFNNFGPGSDTSKRVQWNGYNILSPTQAWNFTVYNFTLGQTWLPDTDIPYSEGL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1629g00004 233 Gene3D - 2 233 IPR012334 -
Vium1629g00004 233 PANTHER PECTINESTERASE 4 225 - -
Vium1629g00004 233 Pfam Pectinesterase 5 218 IPR000070 GO:0030599|GO:0042545
Vium1629g00004 233 FunFam Pectinesterase 4 2 233 - -
Vium1629g00004 233 ProSitePatterns Pectinesterase signature 2. 67 76 IPR033131 -
Vium1629g00004 233 SUPERFAMILY Pectin lyase-like 5 232 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1629g00004 Vium-Chr1629 45288 46257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1629g00004 5 233 Carbohydrate Esterase AT3G10720 75.546 3.82e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1629g00004 K01051 - gmx:100808277 442.965