Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1629g00003 ATGCTCGAAGTTCGGCGCAAAACCCGAAAGAGAATCACGATCATAGCCTTGTCCACAATAGTCCTCATTGGAGTTTTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAAGAACTCAAATGATGCTGAAAACAATGCTGCTTCTGTTTCCAGCTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGACGCCTGCTACAGCAGTCTTGGTTCTCTTGCACACTCGGGTCAGGTTCCACCTGAGGAGTTGTTCTTGTTGTCTATTAAGGTGGCCTTAGCTGAGGCTTCTAAGGCTGCTCAGTATTTCTCTGAGAAAGGAGGGTTCAGTGGCTTGAATGTTGATGACAGTATCATGGAAGATTTTAAGAACTGCAAGGATCTTCTGGGTCTTGCAGTTGATCATTTGAAAAGCTCTCTGGCTTCTGGTGGGAAGTTTTCCTTGGTTGATGTCTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATTGATGGCATTGGAGAGGCAGAAGAAGCATTTAAGGGCAGTGTATTCAATATTCTGAAAAATTCAACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTGAAAAGGCTGCAAGCAGTGTGAAACTGAGACGCTTGTTGAGTACTTTGCCACACAAAGATGAAGAGCCAAAATGGCTTCATTCTAAAGATCGAAAGATGCTACAAGCTGATGATTTGAAGAAGAAAGCTAATATTGTTGTAGCCAAAGATGGCAGCGGAAATTTTAAAACAATCACTTCTGCTCTTCAAGATGTCCCTGAGAAAAGTGACAAGAGAACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCTGGAAGACTTAACTTTGTGGATGGCACCCCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGAACACTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTATGCTCATTCCAACCGCCAATTCTACAGGGAATGCAACATTTATGGCACAGTTGATTTCATTTTCGGTAATTCTGCAGTTGTCCTCCAAAACTGCAACATTTTTCCAAGGGTTCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGATCCCAACATGAACACAGGAATTTCAATTCAAAATTGCAGAATTTCACCCTTTGGGGACTTAAGTTCTGTGCAGACATACCTTGGAAGACCCTGGAAGAACTTCTCAACCACAGTGTTTATGCAGTCCTCATTGGGGAGTTTCATCAACCCAAATGGATGGTTACCATGGATAGGAAACTCAGCACCAGATACAATATTTTATGCAGAATTTCAGAATCTTGGACTTGGAGCTTCAACTAAAAATAGGGTCAAGTGGAAGGGTTTGAAAACCATTACATCTAAACAAGCTAGTAAGTTTACTGTCAAAACTTTTATTTCAGGGGACAAATGGATTCCAGCTTCGGGTGCCACCTTTAAATCTTCTCTGTGA 1677 0.427 MLEVRRKTRKRITIIALSTIVLIGVLCAAVFGTVAHNNNKNSNDAENNAASVSSSVKAVCDVTLYKDACYSSLGSLAHSGQVPPEELFLLSIKVALAEASKAAQYFSEKGGFSGLNVDDSIMEDFKNCKDLLGLAVDHLKSSLASGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGIGEAEEAFKGSVFNILKNSTEFTSNSLAIVTWLEKAASSVKLRRLLSTLPHKDEEPKWLHSKDRKMLQADDLKKKANIVVAKDGSGNFKTITSALQDVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGRLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMNTADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQNCRISPFGDLSSVQTYLGRPWKNFSTTVFMQSSLGSFINPNGWLPWIGNSAPDTIFYAEFQNLGLGASTKNRVKWKGLKTITSKQASKFTVKTFISGDKWIPASGATFKSSL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1629g00003 558 FunFam Pectinesterase 52 209 - -
Vium1629g00003 558 Gene3D - 247 558 IPR012334 -
Vium1629g00003 558 Pfam Plant invertase/pectin methylesterase inhibitor 55 204 IPR006501 GO:0004857
Vium1629g00003 558 SMART PMEI_2 51 204 IPR006501 GO:0004857
Vium1629g00003 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Vium1629g00003 558 Pfam Pectinesterase 252 544 IPR000070 GO:0030599|GO:0042545
Vium1629g00003 558 SUPERFAMILY Pectin lyase-like 250 554 IPR011050 -
Vium1629g00003 558 ProSitePatterns Pectinesterase signature 1. 277 296 IPR018040 -
Vium1629g00003 558 PANTHER PECTINESTERASE 23 548 - -
Vium1629g00003 558 CDD PMEI-like_3 58 210 - -
Vium1629g00003 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 210 IPR035513 -
Vium1629g00003 558 NCBIfam pectinesterase inhibitor domain 49 208 IPR006501 GO:0004857
Vium1629g00003 558 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vium1629g00003 558 FunFam Pectinesterase 246 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1629g00003 Vium-Chr1629 46366 50911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1629g00003 2 558 Carbohydrate Esterase AT3G10710 58.497 0.0 678