Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1629g00002 ATGTCTTCCTTCAAATCTTATGGCAAAGTTGATGAATCAGAGCAAGCCATGCTCGAAGTTCGGCGCAAAACCCGAAAGAGAATCACGATCATAGCCTTGTCCACAATAGTCCTCATTGGAGTTTTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAAGAACTCAAATGATGCTGAAAACAATGCTGCTTCTGTTTCCAGCTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGACGCCTGCTACAGCAGTCTTGGTTCTCTTGCACACTCGGGTCAGGTTCCACCTGAGGAGTTGTTCTTGTTGTCTATTAAGGTGGCCTTAGCTGAGGCTTCTAAGGCTGCTCAGTATTTCTCTGAGAAAGGAGGGTTCAGTGGCTTGAATGTTGATGACAGTATCATGGAAGATTTTAAGAACTGCAAGGATCTTCTGGGTCTTGCAGTTGATCATTTGAAAAGCTCTCTGGCTTCTGGTGGGAAGTTTTCCTTGGTTGATGTCTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATTGATGGCATTGGAGAGGCAGAAGAAGCATTTAAGGGCAGTGTATTCAATATTCTGAAAAATTCAACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTGAAAAGGCTGCAAGCAGTGTGAAACTGAGACGCTTGTTGAGTACTTTGCCACACAAAGATGAAGAGCCAAAATGGCTTCATTCTAAAGATCGAAAGATGCTACAAGCTGATGATTTGAAGAAGAAAGCTAATATTGTTGTAGCCAAAGATGGCAGCGGAAATTTTAAAACAATCACTTCTGCTCTTCAAGATGTCCCTGAGAAAAGTGACAAGAGAACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCTGGAAGACTTAACTTTGTGGATGGCACCCCAACATTTTCATCAGCAACATTTGCTGCGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCACAGAAGCACCAGGCAGTGGCACTGATGAACACTGCTGATCAAGCAGTTTACTATAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTATGCTCATTCCAACCGCCAATTCTACAGGGAATGCAACATTTATGGCACAGTTGATTTCATTTTCGGTAATTCTGCAGTTGTCCTCCAAAACTGCAACATTTTTCCAAGGGTTCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGATCCCAACATGAACACAGGAATTTCAATTCAAAATTGCAGAATTTCACCCTTTGGGGACTTAAGTTCTGTGCAGACATACCTTGGAAGACCCTGGAAGAACTTCTCAACCACAGTGTTTATGCAGTCCTCATTGGGGAGTTTCATCAACCCAAATGGATGGTTACCATGGATAGGAAACTCAGCACCAGATACAATATTTTATGCAGAATTTCAGAATCTTGGACCTGGAGCTTCAACTAAAAATAGGGTCAAGTGGAAGGGTTTGAAAACCATTACATCTAAACAAGCTAGTAAGTTTACTGTCAAAACTTTTATTTCAGGGGACAAATGGATTCCAGCTTCGGGTGCCACCTTTAAATCTTCTCTGTGA 1725 0.4272 MSSFKSYGKVDESEQAMLEVRRKTRKRITIIALSTIVLIGVLCAAVFGTVAHNNNKNSNDAENNAASVSSSVKAVCDVTLYKDACYSSLGSLAHSGQVPPEELFLLSIKVALAEASKAAQYFSEKGGFSGLNVDDSIMEDFKNCKDLLGLAVDHLKSSLASGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGIGEAEEAFKGSVFNILKNSTEFTSNSLAIVTWLEKAASSVKLRRLLSTLPHKDEEPKWLHSKDRKMLQADDLKKKANIVVAKDGSGNFKTITSALQDVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGRLNFVDGTPTFSSATFAAFGKNFIARDMGFRNTAGPQKHQAVALMNTADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQNCRISPFGDLSSVQTYLGRPWKNFSTTVFMQSSLGSFINPNGWLPWIGNSAPDTIFYAEFQNLGPGASTKNRVKWKGLKTITSKQASKFTVKTFISGDKWIPASGATFKSSL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1629g00002 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Vium1629g00002 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Vium1629g00002 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 226 IPR035513 -
Vium1629g00002 574 Pfam Plant invertase/pectin methylesterase inhibitor 71 220 IPR006501 GO:0004857
Vium1629g00002 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 224 IPR035513 -
Vium1629g00002 574 CDD PMEI-like_3 74 226 - -
Vium1629g00002 574 FunFam Pectinesterase 262 574 - -
Vium1629g00002 574 FunFam Pectinesterase 68 225 - -
Vium1629g00002 574 SMART PMEI_2 67 220 IPR006501 GO:0004857
Vium1629g00002 574 Gene3D - 263 574 IPR012334 -
Vium1629g00002 574 PANTHER PECTINESTERASE 39 564 - -
Vium1629g00002 574 Pfam Pectinesterase 268 560 IPR000070 GO:0030599|GO:0042545
Vium1629g00002 574 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Vium1629g00002 574 NCBIfam pectinesterase inhibitor domain 65 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1629g00002 Vium-Chr1629 44086 50912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1629g00002 7 574 Carbohydrate Esterase AT3G10710 58.596 0.0 696