Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1629g00001 ATGTTTTCCCCACCAATGTCCCTTCTCTTCCTCTTTTTCCTCTCCCTCTTTCTTCCCTTACTCTTAGCTCAAACTCCTTCACCATCTCCAACACATGCTACTCATGCTCCTTCTCCATCACCATCCAAACGTGCTCCTTCTCCATCTCCAACGCATGCTTCTTCTCCATCACCTTCTCCATCACCATCTCCAACTCATGCTCCTTCTCCATCATCATCAACACATGCTCCTTCTACTTCTCCTTCTACTTCTCCTTCTCCATCACCCTCTCTAACAAGTGCTCCACCACCACCTCTTCCACCAACTTCACCCTCTTCAGCATGCAAGGCCACATTATATCCAAAACTGTGCCGTTCCCTTTTCTCATCCATTCGATCCTCACCTTCTGATCCTTACAACTTAGGAAAATTCTCCATCAAACAAAGCCTCAAGCAAGCCAAAAAACTGGCCAAAGTCTTCGCGGATTTCCTCAAAAAGCACCAATCTTCATCTCTCAGCAGCGCAGAAATTGCAGCCCTAGAAGACTGCAGTGAGCTGAGCCAGCTGAGTGTTGGCTACCTGGAGTCAGTTTCAGAAGAGCTGAAATCTGCAGACTCGTCCAACACAGAGTTAGTTGAAAAGATCGAAACATATCTCAGTGCTGTGGCCACTAACCATTACACTTGCTATGATGGGTTGGTGGTGATCAAGAGCAACATTGTCAAAACTCTTGCTGTGCCTCTCAACAATGTCACACAACTCTATAGTGTCTCTCTTGGGTTGGTCACGCAAGCTCTGAAGAAGAATCTGAAGAAGCATAAGATTCGCAAACATGGTCTTCCCACCCAGAATCACAAGGTCAGACAGCCACTGAAAAAGCTCATTAAGCTTCTTCACACAAAGTTCGGTTGCGAAGCATCATCCAATTGCAGCACTAGAAGTGAAAGGATTCTTAAAGAAAGTGAGAGCAAGGGAATTCTGCTTAATGAGTTTGTGATTGTGAACCTTAATGGCAAAGACAACTTCACCTCCATTGGAGAGGCTATTGCTGCTGCACCAGATAACTTAAGGCCAGAAGATGGCTATTTCCTTATCTATGCAAAAGAAGGATCCTATGAGGAATATATCACTGTTCCCTTTCCCAAGAAGAATATCTTGCTTATTGGTGATGGCATCAACAAGACTTGCATCACAGGAAACCATAGTGTTGTTGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTTTCTGGAGAAAGATTCGTTGCTGTGGATGTTACATTCAGAAACACTGCAGGCCCTGAGAAGCACCAAGCAGTGGCAGTGAGGAACAATGCAGACCTCTCCACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTCCACTCTCTCAGGCAATTCTACAGGGAATGTGACATTTATGGCACTGTGGATTTCATATTTGGAAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCATTGCCAAAGCAGAAGAATGCTGTCACAGCACAAGGGAGAACTGACCCCAATCAAAACACAGGAATTTCACTCCAGAATTGCAGGATTGAGGCTGCACCTGACTTGGCTGCAGACTTGAACTCAATTGAAAATTACTTGGGCAGGCCATGGAAACTGTACTCAAGGACAGTATACTTGCAGTCATATATTGGAGAACTAATTCAATCCGTTGGATGGTTAGAATGGAATGGAACAAATGGATTAGACACCCTCTTTTATGGTGAGTTCAATAACTTTGGACCTGGTTCTGATACAAGCAAGAGGGTACAATGGAATGGTTACAATATACTGAGCCCTACACAAGCTTGGAACTTTACTGTGTACAATTTTACCTTGGGACAAACATGGCTTCCAGATACTGATATACCCTACTCTGAAGGGCTTTAG 1914 0.4431 MFSPPMSLLFLFFLSLFLPLLLAQTPSPSPTHATHAPSPSPSKRAPSPSPTHASSPSPSPSPSPTHAPSPSSSTHAPSTSPSTSPSPSPSLTSAPPPPLPPTSPSSACKATLYPKLCRSLFSSIRSSPSDPYNLGKFSIKQSLKQAKKLAKVFADFLKKHQSSSLSSAEIAALEDCSELSQLSVGYLESVSEELKSADSSNTELVEKIETYLSAVATNHYTCYDGLVVIKSNIVKTLAVPLNNVTQLYSVSLGLVTQALKKNLKKHKIRKHGLPTQNHKVRQPLKKLIKLLHTKFGCEASSNCSTRSERILKESESKGILLNEFVIVNLNGKDNFTSIGEAIAAAPDNLRPEDGYFLIYAKEGSYEEYITVPFPKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPKQKNAVTAQGRTDPNQNTGISLQNCRIEAAPDLAADLNSIENYLGRPWKLYSRTVYLQSYIGELIQSVGWLEWNGTNGLDTLFYGEFNNFGPGSDTSKRVQWNGYNILSPTQAWNFTVYNFTLGQTWLPDTDIPYSEGL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1629g00001 637 MobiDBLite consensus disorder prediction 27 106 - -
Vium1629g00001 637 MobiDBLite consensus disorder prediction 41 67 - -
Vium1629g00001 637 CDD PMEI-like_3 108 256 - -
Vium1629g00001 637 Pfam Pectinesterase 325 622 IPR000070 GO:0030599|GO:0042545
Vium1629g00001 637 Pfam Plant invertase/pectin methylesterase inhibitor 105 253 IPR006501 GO:0004857
Vium1629g00001 637 MobiDBLite consensus disorder prediction 82 104 - -
Vium1629g00001 637 SUPERFAMILY Pectin lyase-like 323 636 IPR011050 -
Vium1629g00001 637 PANTHER PECTINESTERASE 105 627 - -
Vium1629g00001 637 Coils Coil 187 207 - -
Vium1629g00001 637 FunFam Pectinesterase 320 637 - -
Vium1629g00001 637 PRINTS Proline rich extensin signature 85 101 - -
Vium1629g00001 637 PRINTS Proline rich extensin signature 47 59 - -
Vium1629g00001 637 PRINTS Proline rich extensin signature 25 41 - -
Vium1629g00001 637 PRINTS Proline rich extensin signature 61 82 - -
Vium1629g00001 637 NCBIfam pectinesterase inhibitor domain 106 257 IPR006501 GO:0004857
Vium1629g00001 637 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 106 257 IPR035513 -
Vium1629g00001 637 Gene3D - 323 637 IPR012334 -
Vium1629g00001 637 SMART PMEI_2 99 254 IPR006501 GO:0004857
Vium1629g00001 637 ProSitePatterns Pectinesterase signature 2. 471 480 IPR033131 -
Vium1629g00001 637 Gene3D Invertase/pectin methylesterase inhibitor family protein 104 258 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1629g00001 Vium-Chr1629 39723 43905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1629g00001 107 637 Carbohydrate Esterase AT3G10720 62.500 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1629g00001 K01051 - gmx:100808277 936.021