Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00010 ATGATTGAGTTCACCTTTGAAAGACAGCTTCAGCGGATGGATACGAGTGTCAAACAATTTTCATTTTCATACAAAATGGCAGGAACTGGTTTCTACACTTCCTGTCTTTCCTCTTCCAGCAACTTAGGGGCATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCCTGCCAGGGAAACTACCTGGAACTGGAATGAGAAGATTGGCAATAAGAGCAGAAGTTGAATTTGTGAACGCTGACAAAGCGAAGGAACTTGTAGAAGGGGATGGGTATGCTGTTCTTGATGTGAGAGACAAGAGTCAATTTGAACGAGCTCACATAAAATCTTGTAGTCATGTGCCTCTTTTTATTGAAAACAAAGACAATGATCCTGGTACTATTATCAAAAGGCAACTGCACAATAACTTTTCTGGGTTGTTCTTTGGGTTGCCATTCACTAAGCCAAATCCTGATTTTATACAATCTGTTAAGACCCAGTTTCCACCTGAAAGTAAACTCTTGGTTGTGTGCCAGGAAGGACTGAGGTCTGCTGCTGCAGCAGATAAGTTAGAGAAAGCTGGTTATGAAAATATAGCATGCATAACATCTGGCCTTCAAACCGTAAAACCAGGGACATTTGAGTCTGTAGGGTCCACAGAGTTGGAGAATGCAGGCAAAGCTGGTTTGGTGACAATCCAAGGAAAAATCTCAACTGTGTTGGGAACTATTCTTGTTTGTGCATATATATTCGTTACATTCTTCCCTGAGCAAGCAGAGAAGCTATTCCAATTGGCCCCTACAGGATAA 789 0.417 MIEFTFERQLQRMDTSVKQFSFSYKMAGTGFYTSCLSSSSNLGACWLVLKTHNARALPGKLPGTGMRRLAIRAEVEFVNADKAKELVEGDGYAVLDVRDKSQFERAHIKSCSHVPLFIENKDNDPGTIIKRQLHNNFSGLFFGLPFTKPNPDFIQSVKTQFPPESKLLVVCQEGLRSAAAADKLEKAGYENIACITSGLQTVKPGTFESVGSTELENAGKAGLVTIQGKISTVLGTILVCAYIFVTFFPEQAEKLFQLAPTG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00010 262 CDD RHOD 83 203 - -
Vium1627g00010 262 FunFam Rhodanese-like domain-containing protein 9, chloroplastic 65 207 - -
Vium1627g00010 262 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 72 200 IPR036873 -
Vium1627g00010 262 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 26 261 IPR044615 -
Vium1627g00010 262 Gene3D - 67 207 IPR036873 -
Vium1627g00010 262 ProSiteProfiles Rhodanese domain profile. 88 211 IPR001763 -
Vium1627g00010 262 Pfam Rhodanese-like domain 80 200 IPR001763 -
Vium1627g00010 262 SMART rhod_4 78 208 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00010 Vium-Chr1627 104089 106070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00010 34 256 Sulfurtransferasese or Rhodanese AT2G42220 67.713 9.90e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1627g00010 - - vum:124827221 524.628