Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00009 ATGGGTCCCCAAAGCAACCTTCTATCTCTTTTGGTTGCTCTGGCCGCAGTTTTTTCATCTTTGTATGTCATAAATCCAATTCCACAGTATCTAATAAAGGCCTTGTCACCTTCATCTGCATACTTGGGAAAACCTTTATCAGGGAACTTCCAAAAACATCACAAGAAACACCCTGATAGTGGGAACACCGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATAACACTTCGTATCTCTGTGTTGATCGAAAAGGGTGCTGTAATTTCACTACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTATGGTGCCAAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTACACTTCAACTTCAATTGCATGGAATGACACTGCATTATCCGCGAACGGAACGTTTTACAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGAGCTGTAGGGGCACAAGCAGTAGCCATTAGAGTATCTGGAGATCAATCTGAATTTAAGGGCTGTGGATTCTTCGGAGCACAGGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTTTACGTGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCGGTGGGACAAAGGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCTGAAGGTTGGAATGATTTCAACGACCCTTCTAGAGACCAGACTATCTTCTATGGAGAATATAACTGCTCAGGGTCAGGTGCTAACACGAACTCGAGGGCACCTTACGTACAGAAATTAAATGAAACGCAAGCTTCTGCTTTCCTCAACATTACTTTTATAGATGGCGAGCAATGGTTGGAAACTTCTAAATAA 1161 0.422 MGPQSNLLSLLVALAAVFSSLYVINPIPQYLIKALSPSSAYLGKPLSGNFQKHHKKHPDSGNTDSICDDFPPGIPPPNTNNTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVMVPKTKPNITFQGQGYTSTSIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYVNCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGSGANTNSRAPYVQKLNETQASAFLNITFIDGEQWLETSK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00009 386 Pfam Pectinesterase 87 378 IPR000070 GO:0030599|GO:0042545
Vium1627g00009 386 FunFam Pectinesterase 79 386 - -
Vium1627g00009 386 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Vium1627g00009 386 Gene3D - 79 386 IPR012334 -
Vium1627g00009 386 SUPERFAMILY Pectin lyase-like 84 383 IPR011050 -
Vium1627g00009 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00009 Vium-Chr1627 97934 99932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00009 56 385 Carbohydrate Esterase AT1G05310 71.818 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1627g00009 - - gmx:100806629 700.664