Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00008 ATGGGTCCCCAAAGCAACCTTCTATCTCTTTTGGTTGCTCTGGCCGCAGTTTTTTCATCTTTGTATGTCATAAATCCAATTCCACAGTATCTAATAAAGGCCTTGTCACCTTCATCTGCATACTTGGGAAAACCTTTATCAGGGAACTTCCAAAAACATCACAAGAAACACCCTGATAGTGGGAACACCGATTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATAACACTTCGTATCTCTGTGTTGATCGAAAAGGGTGCTGTAATTTCACTACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTTATGGTGCCAAAAACAAAACCCAACATTACATTTCAAGGACAAGGCTACACTTCAACTTCAATTGCATGGAATGACACTGCATTATCCGCGAACGGAACGTTTTACAGTGGCTCTGTACAAGTTTTCGCCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATGCCAAGTCCTGGAGCTGTAGGGGCACAAGCAGTAGCCATTAGAGTATCTGGAGATCAATCTGAATTTAAGGGCTGTGGATTCTTCGGAGCACAGGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCCCTTTACGTGAACTGCGAAATAGTTTCTATAGCGAACCCTGTACCGGTGGGACAAAGGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGTTTCAGGTGATGAAAACACAGGGTTTGCATTTGTGAACAGTACAGTTGGAGGAAACGGTAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCTCGTGTTGTCTTTGCCTTCACATCAATGTCTGATATCATTGCTCCTGAAGGACTATCTTCTATGGAGAATATAACTGCTCAGGGTCAGGTGCTAACACGAACTCGAGGGCACCTTACGTACAGAAATTAA 1053 0.4255 MGPQSNLLSLLVALAAVFSSLYVINPIPQYLIKALSPSSAYLGKPLSGNFQKHHKKHPDSGNTDSICDDFPPGIPPPNTNNTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVMVPKTKPNITFQGQGYTSTSIAWNDTALSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYVNCEIVSIANPVPVGQRSINGAVTAHGRVSGDENTGFAFVNSTVGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGLSSMENITAQGQVLTRTRGHLTYRN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00008 350 Pfam Pectinesterase 87 330 IPR000070 GO:0030599|GO:0042545
Vium1627g00008 350 SUPERFAMILY Pectin lyase-like 84 330 IPR011050 -
Vium1627g00008 350 ProSitePatterns Pectinesterase signature 2. 233 242 IPR033131 -
Vium1627g00008 350 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 335 - -
Vium1627g00008 350 Gene3D - 79 346 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00008 Vium-Chr1627 97934 99934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00008 56 331 Carbohydrate Esterase AT1G05310 70.290 1.56e-150 427