Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00003 ATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTTCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTTGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAAGAACACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCCTAGTGGCCAAAACAGACGTGTTTCATCTGGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATAGGAGGATTCAAGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAACAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTCGAGGCTCTCAATCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCCACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCTACTCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTGGCGATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTTGAATAG 1140 0.4789 MRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGSLLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHLLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00003 379 MobiDBLite consensus disorder prediction 1 91 - -
Vium1627g00003 379 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 130 IPR004827 GO:0003700|GO:0006355
Vium1627g00003 379 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Vium1627g00003 379 ProSiteProfiles DOG1 domain profile. 161 375 IPR025422 GO:0006351|GO:0043565
Vium1627g00003 379 SMART brlzneu 84 157 IPR004827 GO:0003700|GO:0006355
Vium1627g00003 379 Coils Coil 107 134 - -
Vium1627g00003 379 SUPERFAMILY Leucine zipper domain 88 130 IPR046347 GO:0003700|GO:0006355
Vium1627g00003 379 FunFam BZIP family transcription factor 87 136 - -
Vium1627g00003 379 Gene3D - 87 137 - -
Vium1627g00003 379 PANTHER TRANSCRIPTION FACTOR TGA9 13 377 - -
Vium1627g00003 379 MobiDBLite consensus disorder prediction 14 42 - -
Vium1627g00003 379 Pfam bZIP transcription factor 88 123 IPR004827 GO:0003700|GO:0006355
Vium1627g00003 379 Pfam Seed dormancy control 179 253 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00003 Vium-Chr1627 5202 11062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00003 1 377 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 69.054 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1627g00003 DOG1 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1627g00003 K14431 - gmx:100815176 671.774