Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00002 ATGGCTTCCAAGACCACCAACCAAACAACAAATAATCAATTGGAACCACTTCCACCACCTCAGTACCGTCACCCTCATCCTCATCACTATCAGTTACAACAACACCAACCCCAAAACCATCAAGTTCATGACCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCGTCTTCTTCTATCCCTGGAAACTACCACCTATGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACAGAACTCATCATCCGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTTCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTTGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAAGAACACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCCTAGTGGCCAAAACAGACGTGTTTCATCTGGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATAGGAGGATTCAAGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAACAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTCGAGGCTCTCAATCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCCACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCTACTCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTGGCGATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTTGAATAG 1458 0.4726 MASKTTNQTTNNQLEPLPPPQYRHPHPHHYQLQQHQPQNHQVHDHQISFGMMQSSSSSSSIPGNYHLCKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGSLLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHLLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00002 485 FunFam BZIP family transcription factor 193 242 - -
Vium1627g00002 485 Coils Coil 213 240 - -
Vium1627g00002 485 MobiDBLite consensus disorder prediction 94 197 - -
Vium1627g00002 485 MobiDBLite consensus disorder prediction 1 17 - -
Vium1627g00002 485 MobiDBLite consensus disorder prediction 94 111 - -
Vium1627g00002 485 SMART brlzneu 190 263 IPR004827 GO:0003700|GO:0006355
Vium1627g00002 485 Gene3D - 193 243 - -
Vium1627g00002 485 SUPERFAMILY Leucine zipper domain 194 236 IPR046347 GO:0003700|GO:0006355
Vium1627g00002 485 MobiDBLite consensus disorder prediction 120 148 - -
Vium1627g00002 485 Pfam Seed dormancy control 285 359 IPR025422 GO:0006351|GO:0043565
Vium1627g00002 485 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 236 IPR004827 GO:0003700|GO:0006355
Vium1627g00002 485 PANTHER TRANSCRIPTION FACTOR TGA9 103 483 - -
Vium1627g00002 485 MobiDBLite consensus disorder prediction 1 43 - -
Vium1627g00002 485 CDD bZIP_HBP1b-like 194 243 - -
Vium1627g00002 485 ProSiteProfiles DOG1 domain profile. 267 481 IPR025422 GO:0006351|GO:0043565
Vium1627g00002 485 Pfam bZIP transcription factor 194 229 IPR004827 GO:0003700|GO:0006355
Vium1627g00002 485 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 197 212 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00002 Vium-Chr1627 5202 11996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00002 63 483 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.158 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1627g00002 DOG1 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1627g00002 K14431 - gmx:100815176 787.719