Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1627g00001 ATGGCTTCCAAGACCACCAACCAAACAACAAATAATCAATTGGAACCACTTCCACCACCTCAGTACCGTCACCCTCATCCTCATCACTATCAGTTACAACAACACCAACCCCAAAACCATCAAGTTCATGACCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCGTCTTCTTCTATCCCTGGAAACTACCACCTCAGATGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCCTCCACTGTTCAAGACCAAAGACAGAACTCATCATCCGGAATGAGGCCTCCGACTCTCAACATTTTCCCATCCAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGTTAGTTTCTCCGCAAACAAGTGGTTCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAGCTGCTTCTGCCCCTCAACCACCCAAAGCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCGAGTTCTGAACAAGAAGGACCAAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCAAGTAGGGTTAGGCTTAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTTCACTTTTGGGAGGAGAGCAAAGCCTCCCTGTTGCTATGAATACCATTAGCTCGGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGGTTGAAGAACACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTCTTTGTGGACAATTGCTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCCTAGTGGCCAAAACAGACGTGTTTCATCTGGTTTCTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATAGGAGGATTCAAGCCTTCTGAACTCATTAAGATTATTCTGAGTCAAATTGAGCCTCTGACGGAACAACAAATATTGGGTATATGTGGATTACAACAATCGACTCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTCGAGGCTCTCAATCAATCTCTTTCGGACACCATAACTTCAGACTCTCTAAGCTATCCTCTCAATATGGCTAACTATATGGGACAAATGGCTGTGGCCATGAACAAGCTCTCCACTCTCGAAGGTTTCGTTAGACAGGCAGATAATCTTCGGCACCAAACCATTCACCGTCTGCATCTACTCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTGGCGATAGCCGAGTACTTCCATCGTCTTCGAGCTCTGAGTTCATTGTGGTTGGCACGCCCTCGCGTTGAATAG 1461 0.473 MASKTTNQTTNNQLEPLPPPQYRHPHPHHYQLQQHQPQNHQVHDHQISFGMMQSSSSSSSIPGNYHLRCKDSGAYDLGELDQAFFLYLDGQADPSTVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNEAASAPQPPKAVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRVRLNQLEQELQRARTQGMFLGGGSLLGGEQSLPVAMNTISSEAAMFDVEYARWVEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPLNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHLLLTTRQAARCFLAIAEYFHRLRALSSLWLARPRVE 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1627g00001 486 ProSiteProfiles DOG1 domain profile. 268 482 IPR025422 GO:0006351|GO:0043565
Vium1627g00001 486 CDD bZIP_HBP1b-like 195 244 - -
Vium1627g00001 486 MobiDBLite consensus disorder prediction 121 149 - -
Vium1627g00001 486 Pfam bZIP transcription factor 195 230 IPR004827 GO:0003700|GO:0006355
Vium1627g00001 486 SMART brlzneu 191 264 IPR004827 GO:0003700|GO:0006355
Vium1627g00001 486 MobiDBLite consensus disorder prediction 1 17 - -
Vium1627g00001 486 SUPERFAMILY Leucine zipper domain 195 237 IPR046347 GO:0003700|GO:0006355
Vium1627g00001 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 237 IPR004827 GO:0003700|GO:0006355
Vium1627g00001 486 Coils Coil 214 241 - -
Vium1627g00001 486 MobiDBLite consensus disorder prediction 95 198 - -
Vium1627g00001 486 MobiDBLite consensus disorder prediction 95 112 - -
Vium1627g00001 486 PANTHER TRANSCRIPTION FACTOR TGA9 104 484 - -
Vium1627g00001 486 Pfam Seed dormancy control 286 360 IPR025422 GO:0006351|GO:0043565
Vium1627g00001 486 Gene3D - 194 244 - -
Vium1627g00001 486 FunFam BZIP family transcription factor 194 243 - -
Vium1627g00001 486 MobiDBLite consensus disorder prediction 1 43 - -
Vium1627g00001 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1627g00001 Vium-Chr1627 5202 11997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1627g00001 66 484 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.773 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1627g00001 DOG1 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1627g00001 K14431 - gmx:100815176 786.563