Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1626g00007 ATGAATGACCTATTTTCAAGCTCCTTTAAAAAATACAGTGACATGAACAATGAGTCTCAAATGTATGACGTGGAGGCTGGAAAGGAAAATGTGAACCTGGATAAGTTCTTTGATGAGGTGGAGAATGTGAAGGAAGACATGAGATCAGTGGAGAAGTTGTATAGAAAATTGCAAGAGTCCAATGAAGAGAGCAAGATCGTTCATAACGCTAAAACCATGAAAGATCTTCGAGCAAAAATGGATCAAGATGTTCAACAGGTTCTCAAACGCGTCAAAATGATAAAGGGCAAGCTTGAAGCTTTGGAACGTTCAAATGCAGCCAATAGAAACCTCCCAGGATGTGGTCCGGGTTCCTCAACAGATCGAACAAGAACCTCAGTGGTCAGTGGCTTAGGGAAGAAATTGAAGGACATGATGGACGATTTTCAAGGACTGAGAGCAAGAATGCAAAACGAGTACAAGGAAACCGTGGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCCGATGAAGATACCATTGAGAACTTGATATCAAGCGGTGAAAGTGAAAGTTTTCTTCAAAGGGCAATTCAAGAACAGGGTAGAGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTGTTAAGGAGATAGAGAAGAACTTGATGGAGTTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAAGGTCAGCAACTAAACAACATTGAGAGTCATGTCGCACATGCAAGTTCTTTTGTGAGAAGAGGCACAGAACAACTTCATGAAGCCAGAGAGTATCAAAAGAGCTCCAGAGAATGGACTTGTTACGCCATTCTTCTTGGCATTGTTCTTGTCATTGTGCTCTTGTTTCCTCTCTTGACATCACTTTTGCCTCACTTGTTATATTGA 915 0.4164 MNDLFSSSFKKYSDMNNESQMYDVEAGKENVNLDKFFDEVENVKEDMRSVEKLYRKLQESNEESKIVHNAKTMKDLRAKMDQDVQQVLKRVKMIKGKLEALERSNAANRNLPGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLMELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREYQKSSREWTCYAILLGIVLVIVLLFPLLTSLLPHLLY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1626g00007 304 Coils Coil 33 63 - -
Vium1626g00007 304 Gene3D - 29 162 - -
Vium1626g00007 304 MobiDBLite consensus disorder prediction 111 126 - -
Vium1626g00007 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Vium1626g00007 304 Coils Coil 84 104 - -
Vium1626g00007 304 Gene3D - 194 295 - -
Vium1626g00007 304 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Vium1626g00007 304 CDD SynN 33 190 IPR006011 GO:0016020
Vium1626g00007 304 CDD SNARE_syntaxin1-like 202 262 - -
Vium1626g00007 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium1626g00007 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Vium1626g00007 304 MobiDBLite consensus disorder prediction 107 126 - -
Vium1626g00007 304 SMART tSNARE_6 198 265 IPR000727 -
Vium1626g00007 304 PANTHER SYNTAXIN 41 288 IPR045242 -
Vium1626g00007 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vium1626g00007 304 FunFam Syntaxin 132 196 296 - -
Vium1626g00007 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Vium1626g00007 304 Pfam SNARE domain 240 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1626g00007 Vium-Chr1626 48523 50505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1626g00007 1 303 SNARE and Associated Proteins AT1G61290 78.218 1.77e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1626g00007 K08486 - gmx:100818999 510.76