Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1626g00006 ATGTTGCTGGATCCCGGAGGGATCGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCGACTGACCTGATACCAGATGTGCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGCCTCAGCCTTGGAAAAGAAAAGCGAGGATTATACTGGATTACCAGTTCATTGGAATGTTACAATTTGCCCACGGGAGATGAAGCTTATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTCTGAAGGAAGAGTCATCGACTCAACCATTTGGTTTGCCGGTGCCTAATTCATGCCAAAATGAAAGAAATGGCCAGCTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCATTTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGACCGCGAGCAGATGCCCGAGGAAGAAACCAGTTGCTGCCACGGTACTGGCCCAGATGTACTGATCTTGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCGCTTAAAATCCTTGATGCAAAGGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGTTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCGAGTGCTGTGCCATCCGACCAGGACAATGAAACTAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCCAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAAAGTGGCATATTGGGCTCAAAAAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCGAGCATCGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGTAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTGCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACCAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAGAAAATGAAAGCCGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTCGACACCCTCGCAAATTTAGCTATCCTGGGAGAGGGTGAAGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCACCCGCGCCATAGACCTGGCTGTTCTTGCATCGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACGTGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGACGCGAGAAGAAACAAACAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATTCTCAACCACTACCTTCGTCTGAAATTTTGCATGACGAAGATTCATTACCCTGTAGTAACACAGGTGACAGTAGCCCGAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCCCCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGGTATCTGAAGCAGCAGACTGTGAACTCGGGTACTGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCTCAATCTTTGTCTATGAATGTGTGA 2391 0.4479 MLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSTDLIPDVPSLAELSNSFDKMYCNERLPASALEKKSEDYTGLPVHWNVTICPREMKLMNGMRNEDKASSCLNMCQQPSSLKEESSTQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKHFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCADNSWDPERSSCSAAPELTAEQLENLLPPCNSAVPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQTEKEAETTRKKQQQQHSQPLPSSEILHDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDKEHAQSLSMNV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1626g00006 796 CDD B3_DNA 250 351 IPR003340 GO:0003677
Vium1626g00006 796 MobiDBLite consensus disorder prediction 149 219 - -
Vium1626g00006 796 Pfam CW-type Zinc Finger 485 527 IPR011124 GO:0008270
Vium1626g00006 796 FunFam B3 domain-containing transcription repressor VAL1 230 357 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 355 371 - -
Vium1626g00006 796 SMART B3_2 252 353 IPR003340 GO:0003677
Vium1626g00006 796 MobiDBLite consensus disorder prediction 773 796 - -
Vium1626g00006 796 ProSiteProfiles B3 DNA-binding domain profile. 252 353 IPR003340 GO:0003677
Vium1626g00006 796 Pfam B3 DNA binding domain 252 351 IPR003340 GO:0003677
Vium1626g00006 796 MobiDBLite consensus disorder prediction 633 796 - -
Vium1626g00006 796 SUPERFAMILY DNA-binding pseudobarrel domain 249 351 IPR015300 -
Vium1626g00006 796 Coils Coil 634 654 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 741 761 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 634 650 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 352 375 - -
Vium1626g00006 796 Gene3D - 230 356 IPR015300 -
Vium1626g00006 796 Gene3D - 484 537 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 149 181 - -
Vium1626g00006 796 ProSiteProfiles Zinc finger CW-type profile. 480 530 IPR011124 GO:0008270
Vium1626g00006 796 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 2 755 - -
Vium1626g00006 796 MobiDBLite consensus disorder prediction 651 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1626g00006 Vium-Chr1626 36976 48340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1626g00006 183 787 B3 DNA Binding Superfamily AT4G32010 46.743 7.37e-167 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1626g00006 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1626g00006 K09287 - gmx:100782114 1492.63